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Updates #570

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Updates

Updates #570

Triggered via pull request November 28, 2023 20:15
@chris-cheshirechris-cheshire
synchronize #217
luslab:dev
Status Failure
Total duration 56m 3s
Artifacts 1

ci.yml

on: pull_request
Run standard pipeline test (edge version)
5m 29s
Run standard pipeline test (edge version)
Matrix: Run standard pipeline test
Matrix: Run extended pipeline test
Matrix: unit_tests
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2 errors and 125 warnings
23.04.0 test_peak_callers_ctrl_tests
Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag test_peak_callers_ctrl_tests --symlink --kwdof --color=yes" Launched at "/home/runner/work/cutandrun/cutandrun" Attempts exhausted, made 3 attempts : Attempt #1 started at : 20:16:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 20:21:12 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 20:25:04 GMT+0000 (Coordinated Universal Time)
test_peak_callers_ctrl_tests
Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag test_peak_callers_ctrl_tests --symlink --kwdof --color=yes" Launched at "/home/runner/work/cutandrun/cutandrun" Attempts exhausted, made 3 attempts : Attempt #1 started at : 20:19:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 20:23:58 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 20:27:38 GMT+0000 (Coordinated Universal Time)
23.04.0 test_consensus_peaks_invalid
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_invalid
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_samplesheet_3
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_save_ref
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_skip_fastqc
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_save_trimmed
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_save_spikein_align
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_save_unaligned
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_only_align_end_to_end
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_macs2_seacr
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_only_input
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_only_align_local
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_seacr_macs2_noigg
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_samplesheet_2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_seacr_macs2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_bam_scale_cpm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_only_filtering_with_mitochondrial_reads
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_bam_scale_cpm_iggscale
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_only_filtering_without_mitochondrial_reads
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_duplicates_mark
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_bam_scale_none
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_bam_scale_spikein
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_filtering_noqfilter
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_duplicates_remove
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_bam_scale_bpm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_genome_options
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_intermed
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_consensus_peaks_invalid
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_bam_scale_rpkm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_filtering_withqfilter
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_linear_duplicates_remove_target
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_duplicates_remove_target
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_linear_duplicates_remove
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_reporting
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_preseq_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_heatmaps_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_skip_trimming
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_save_merged
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_invalid
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_align_only_align
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_heatmaps_grouped
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_heatmaps_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_consensus_peaks_group
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_consensus_peaks_all
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_seacr
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_igv_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run standard pipeline test
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bam_scale_none
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run standard pipeline test (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_igv_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_only_filtering
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_multiqc_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bam_scale_bpm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bam_scale_cpm_iggscale
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bam_scale_cpm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bam_scale_spikein
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bam_scale_rpkm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_peak_qc_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_multiqc_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_peak_qc_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_genome_options_spikein
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run standard pipeline test (edge version)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_preseq_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_samplesheet_3
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_genome_options
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_filtering_withqfilter
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_filtering_noqfilter
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_macs2_seacr
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_only_input
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_consensus_peaks_all
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_seacr_macs2_noigg
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_consensus_peaks_group
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_peak_calling_only_peak_calling
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_macs2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_seacr_macs2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_samplesheet_2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_save_spikein_align
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_only_align_end_to_end
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_duplicates_mark
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_save_ref
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_only_align_local
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_genome_options_spikein
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_save_unaligned
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_intermed
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_duplicates_remove
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_duplicates_remove_target
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_only_filtering_without_mitochondrial_reads_mito_name_null
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_only_filtering_with_mitochondrial_reads
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_skip_trimming
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_seacr
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_only_filtering_without_mitochondrial_reads
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_linear_duplicates_remove
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_skip_fastqc
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_save_merged
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_only_align
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_save_trimmed
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_reporting
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_align_linear_duplicates_remove_target
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_preseq_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_heatmaps_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_samplesheet
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_heatmaps_grouped
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_dtqc_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_multiqc_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_macs2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_heatmaps_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_igv_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 verify_output_reporting_skip_dtqc_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_peak_qc_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_multiqc_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_preseq_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run extended pipeline test (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_peak_qc_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_peak_calling_only_peak_calling
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_only_filtering
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_igv_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run extended pipeline test
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_samplesheet
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_dtqc_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
verify_output_reporting_skip_dtqc_false
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_ctrl_tests
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
23.04.0 test_peak_callers_ctrl_tests
There are over 10,000 files in this artifact, consider creating an archive before upload to improve the upload performance.
test_peak_callers_ctrl_tests
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_peak_callers_ctrl_tests
There are over 10,000 files in this artifact, consider creating an archive before upload to improve the upload performance.

Artifacts

Produced during runtime
Name Size
logs-unit-tests Expired
30.3 GB