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nf-core · Oct 21, 2023 · 169679f · 169679f
1 parent 5b11de1
commit 169679f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -359,7 +359,7 @@ if(params.run_read_filter) {
             if (params.mito_name == null && params.genome == null){
                 ext.args2 = ''
             } else if (params.mito_name == null) {
-                ext.args2 = { params.remove_mitochondrial_reads ? "-e 'rname != \"${params.genomes[ params.genome ][ "mito_name"]}\"'" : '' }
+                ext.args2 = { params.remove_mitochondrial_reads ? "-e 'rname != \"${params.genomes[params.genome]["mito_name"]}\"'" : '' }
             } else {
                 ext.args2 = { params.remove_mitochondrial_reads ? "-e 'rname != \"${params.mito_name}\"'" : '' }
             }