Update genome blacklists

nf-core · Aug 31, 2023 · 4899d5e · 4899d5e
1 parent dbea235
commit 4899d5e
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Showing 8 changed files with 4,758 additions and 778 deletions.
diff --git a/assets/blacklists/GCRh38-blacklist.bed b/assets/blacklists/GCRh38-blacklist.bed
diff --git a/assets/blacklists/GRCh37-blacklist.bed b/assets/blacklists/GRCh37-blacklist.bed
diff --git a/assets/blacklists/GRCm38-blacklist.bed b/assets/blacklists/GRCm38-blacklist.bed
diff --git a/assets/blacklists/GRCm39-blacklist.bed b/assets/blacklists/GRCm39-blacklist.bed
diff --git a/assets/blacklists/hg38-blacklist.bed b/assets/blacklists/hg38-blacklist.bed
diff --git a/assets/blacklists/mm10-blacklist.bed b/assets/blacklists/mm10-blacklist.bed
diff --git a/assets/blacklists/mm39-blacklist.bed b/assets/blacklists/mm39-blacklist.bed
diff --git a/conf/igenomes.config b/conf/igenomes.config
@@ -34,7 +34,7 @@ params {
             bed12       = "${params.igenomes_base}/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/genes.bed"
             mito_name   = "chrM"
             macs_gsize  = "2.7e9"
-            blacklist   = "${projectDir}/assets/blacklists/hg38-blacklist.bed"
+            blacklist   = "${projectDir}/assets/blacklists/GCRh38-blacklist.bed"
         }
         'CHM13' {
             fasta       = "${params.igenomes_base}/Homo_sapiens/UCSC/CHM13/Sequence/WholeGenomeFasta/genome.fa"