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chris-cheshire committed Nov 28, 2023
1 parent 448b192 commit f0a800a
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions subworkflows/local/prepare_genome.nf
Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ workflow PREPARE_GENOME {
ch_fasta = GUNZIP_FASTA ( [ [id:"target_fasta"], params.fasta ] ).gunzip
ch_versions = ch_versions.mix(GUNZIP_FASTA.out.versions)
} else {
ch_fasta = Channel.from( file(params.fasta) ).map { row -> [[id:"spikein_fasta"], row] }
ch_fasta = Channel.from( file(params.fasta) ).map { row -> [[id:"fasta"], row] }
}

/*
Expand Down Expand Up @@ -116,7 +116,7 @@ workflow PREPARE_GENOME {
/*
* Index genome fasta file
*/
ch_fasta_index = SAMTOOLS_FAIDX ( ch_fasta, [[id:"spikein_fasta"], []] ).fai
ch_fasta_index = SAMTOOLS_FAIDX ( ch_fasta, [[id:"fasta"], []] ).fai
ch_versions = ch_versions.mix(SAMTOOLS_FAIDX.out.versions)

/*
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