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Dev #238

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Dev #238

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2727de3
Merge pull request #214 from nf-core/dev
chris-cheshire Oct 25, 2023
6e1125d
Merge pull request #230 from nf-core/dev
chris-cheshire Feb 1, 2024
41d20ce
Update nextflow.config to load custom pipeline configs
ahepperla Apr 12, 2024
084f5fd
Update nextflow.config updated to dev branch
ahepperla Apr 12, 2024
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12 changes: 6 additions & 6 deletions nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -165,12 +165,12 @@ try {
System.err.println("WARNING: Could not load nf-core/config profiles: ${params.custom_config_base}/nfcore_custom.config")
}

// // Load nf-core/cutandrun custom config
// try {
// includeConfig "${params.custom_config_base}/pipeline/cutandrun.config"
// } catch (Exception e) {
// System.err.println("WARNING: Could not load nf-core/config/cutandrun profiles: ${params.custom_config_base}/pipeline/cutandrun.config")
// }
// Load nf-core/cutandrun custom config
try {
includeConfig "${params.custom_config_base}/pipeline/cutandrun.config"
} catch (Exception e) {
System.err.println("WARNING: Could not load nf-core/config/cutandrun profiles: ${params.custom_config_base}/pipeline/cutandrun.config")
}

profiles {
debug {
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