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37 Open 74 Closed
37 Open 74 Closed
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Issues list

For spike-in analysis, remove control features from outputs enhancement New feature or request
#277 opened Jun 4, 2024 by dshechter
Requests: Enhancements to DESeq2 csv outputs and PDF outputs enhancement New feature or request
#276 opened Jun 4, 2024 by dshechter
Provide a parameter to disable rmarkdown report creation in the differential abundance pipeline enhancement New feature or request
#275 opened May 24, 2024 by shreya-sharma20
2
Missing colour and hover labels in interactive report volcano plot bug Something isn't working
#270 opened May 21, 2024 by ajeffs
4
PosixFileAttributeView bug Something isn't working
#263 opened Apr 12, 2024 by nick-youngblut
Auto-format sample names enhancement New feature or request
#262 opened Apr 12, 2024 by nick-youngblut
2
Failed to publish file => double forward slashes bug Something isn't working
#261 opened Apr 12, 2024 by nick-youngblut
Error in TABULAR_TO_GSEA_CHIP bug Something isn't working
#258 opened Apr 9, 2024 by acpicornell
1
Error with samplesheet.csv with two column headers that have prefix in common bug Something isn't working
#249 opened Mar 12, 2024 by aghr
@jenmuell
8
Continuous covariates enhancement New feature or request
#247 opened Mar 7, 2024 by BEFH
6
Name of blocking variable not correctly recognized bug Something isn't working
#245 opened Feb 29, 2024 by aghr
@LaurenceKuhl
7
Dev version: On parameters website list parameter gene_sets_files in section GSEA enhancement New feature or request
#243 opened Feb 23, 2024 by aghr
1
Mark --matrix as a required parameter in the parameter section on the diffabundance website enhancement New feature or request
#238 opened Feb 20, 2024 by aghr
1
Setting differential_subset_to_contrast_samples: true with output from nfcore rnaseq causes error bug Something isn't working
#234 opened Feb 16, 2024 by aghr
@jenmuell
2
RMARKDOWNNOTEBOOK - Error in \cor()\: ! supply both 'x' and 'y' or a matrix-like 'x' bug Something isn't working
#230 opened Feb 2, 2024 by tracelail
3
technical replicates enhancement New feature or request
#220 opened Dec 21, 2023 by animesh
3
PLOT_EXPLORATORY module breaks with large number of samples. bug Something isn't working
#214 opened Dec 5, 2023 by kai-lawsonmcdowall
1
Multiple variables/interactions enhancement New feature or request
#211 opened Dec 4, 2023 by mtruglio
2
Add log2_assays docu to nextflow_schema after shiny fix enhancement New feature or request
#153 opened Aug 24, 2023 by WackerO
@WackerO
3
add apeglm log fold change shrinkage enhancement New feature or request
#152 opened Aug 18, 2023 by bumproo
2
Differential splicing analysis using rMATS enhancement New feature or request
#115 opened Apr 21, 2023 by dshechter
1
Reduce file size for report enhancement New feature or request
#106 opened Mar 29, 2023 by pinin4fjords
3
Plot differentially expressed genes by Biotype enhancement New feature or request
#100 opened Mar 24, 2023 by grst
@ErikaKvalem
1
Transcription factor and Pathway scoring using DoRothEA/PROGENy enhancement New feature or request
#99 opened Mar 24, 2023 by grst
1
Add BioQC to identify tissue heterogeneity enhancement New feature or request
#98 opened Mar 24, 2023 by grst
1
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