Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_FUNCSCAN:FUNCSCAN:ARG:DEEPARG_DOWNLOADDATA'

Caused by:
  Process `NFCORE_FUNCSCAN:FUNCSCAN:ARG:DEEPARG_DOWNLOADDATA` terminated with an error exit status (1)


Command executed:

  # Theano needs a writable space and uses the home directory by default,
  # but the latter is not always writable, for instance when Singularity
  # is run in --no-home mode
  mkdir -p theano
  export THEANO_FLAGS="base_compiledir=$PWD/theano"
  
  deeparg \
      download_data \
       \
      -o db/
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_FUNCSCAN:FUNCSCAN:ARG:DEEPARG_DOWNLOADDATA":
      deeparg: 1.0.4
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/biocontainers/deeparg:1.0.4--pyhdfd78af_0' locally
  1.0.4--pyhdfd78af_0: Pulling from biocontainers/deeparg
  ca7680d1025d: Pulling fs layer
  4f4fb700ef54: Pulling fs layer
  a6825aaea7a2: Pulling fs layer
  3dd71d918dbb: Pulling fs layer
  3dd71d918dbb: Waiting
  4f4fb700ef54: Verifying Checksum
  4f4fb700ef54: Download complete
  ca7680d1025d: Verifying Checksum
  ca7680d1025d: Download complete
  ca7680d1025d: Pull complete
  3dd71d918dbb: Verifying Checksum
  3dd71d918dbb: Download complete
  4f4fb700ef54: Pull complete
  a6825aaea7a2: Verifying Checksum
  a6825aaea7a2: Download complete
  a6825aaea7a2: Pull complete
  3dd71d918dbb: Pull complete
  Digest: sha256:b92ea672c8edce22a73a71b3156141026a45cf16ed18d020e9b4f9cbc014554c
  Status: Downloaded newer image for quay.io/biocontainers/deeparg:1.0.4--pyhdfd78af_0
  WARNING (theano.configdefaults): g++ not detected ! Theano will be unable to execute optimized C-implementations (for both CPU and GPU) and will default to Python implementations. Performance will be severely degraded. To remove this warning, set Theano flags cxx to an empty string.
  /usr/local/lib/python2.7/site-packages/theano/tensor/signal/downsample.py:6: UserWarning: downsample module has been moved to the theano.tensor.signal.pool module.
    "downsample module has been moved to the theano.tensor.signal.pool module.")
  /usr/local/lib/python2.7/site-packages/sklearn/cross_validation.py:41: DeprecationWarning: This module was deprecated in version 0.18 in favor of the model_selection module into which all the refactored classes and functions are moved. Also note that the interface of the new CV iterators are different from that of this module. This module will be removed in 0.20.
    "This module will be removed in 0.20.", DeprecationWarning)
  INFO:root:Checking downloaded data db/ Directory
  INFO:root:Downloading Data from https://zenodo.org/records/8280582/files/deeparg.zip
  INFO:root:Downloading: https://zenodo.org/records/8280582/files/deeparg.zip
  
  0it [00:00, ?it/s]
  1it [00:00, 883.38it/s]
  Traceback (most recent call last):
    File "/usr/local/bin/deeparg", line 10, in <module>
      sys.exit(main())
    File "/usr/local/lib/python2.7/site-packages/deeparg/entry.py", line 159, in main
      args.func(args)
    File "/usr/local/lib/python2.7/site-packages/deeparg/entry.py", line 83, in download_data
      with zipfile.ZipFile("{}/deeparg.gz".format(args.output_path), 'r') as zip_ref:
    File "/usr/local/lib/python2.7/zipfile.py", line 770, in __init__
      self._RealGetContents()
    File "/usr/local/lib/python2.7/zipfile.py", line 811, in _RealGetContents
      raise BadZipfile, "File is not a zip file"
  zipfile.BadZipfile: File is not a zip file

Work dir:
  /home/runner/work/funcscan/funcscan/.nf-test/tests/d99a60cee47c5be7a5168986c5ae96ee/work/11/f85645021132a49bdf5c8cd8bd3120

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`

 -- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/d99a60cee47c5be7a5168986c5ae96ee/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/d99a60cee47c5be7a5168986c5ae96ee/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.10.3 is available - Please consider updating your version to it