fix: small and full AWS test

nf-core · Nov 30, 2024 · b72d716 · b72d716
1 parent 4dea965
commit b72d716
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Showing 2 changed files with 1 addition and 45 deletions.
diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
@@ -42,31 +42,8 @@ jobs:
             {
               "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}",
-              "build_references": true,
-              "velocity": true
             }
           profiles: test_full,aws_tower
-      - uses: actions/upload-artifact@v3
-        with:
-          name: Tower debug log file
-          path: tower_action_*.log
-
-      - name: Launch execution workflow via tower
-        uses: seqeralabs/action-tower-launch@v2
-        with:
-          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
-          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
-          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
-          revision: ${{ github.sha }}
-          workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/marsseq/work-${{ github.sha }}
-          parameters: |
-            {
-              "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
-              "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}/references",
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}",
-              "velocity": true
-            }
-          profiles: test_full
 
       - uses: actions/upload-artifact@v4
         with:

diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
@@ -22,30 +22,9 @@ jobs:
           parameters: |
             {
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
-              "build_references": true,
-              "velocity": true
-            }
-          profiles: test,aws_tower
-      - uses: actions/upload-artifact@v3
-        with:
-          name: Tower debug log file
-          path: tower_action_*.log
-
-      - name: Launch execution workflow via tower
-        uses: seqeralabs/action-tower-launch@v2
-        with:
-          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
-          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
-          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
-          workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/marsseq/work-${{ github.sha }}
-          parameters: |
-            {
-              "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}/references",
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
-              "velocity": true
             }
           profiles: test
-
+ 
       - uses: actions/upload-artifact@v4
         with:
           name: Seqera Platform debug log file