fix ionannotator input for mzml files

nf-core · Sep 21, 2023 · 7bcd973 · 7bcd973
1 parent 3eecfbf
commit 7bcd973
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/mhcquant.nf b/workflows/mhcquant.nf
@@ -185,7 +185,7 @@ workflow MHCQUANT {
         ch_decoy_db = ch_fasta_file
     }
 
-    ch_ms_files = (branched_ms_files.mzml)
+    ch_ms_files = branched_ms_files.mzml.map{ meta, mzml -> [meta, mzml[0]]}
     // Raw file conversion
     THERMORAWFILEPARSER(branched_ms_files.raw)
     ch_versions = ch_versions.mix(THERMORAWFILEPARSER.out.versions.ifEmpty(null))