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nf-core/mhcquant v2.2.0 - Silver Titanium Ostrich
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@marissaDubbelaar marissaDubbelaar released this 14 Jan 16:23
· 610 commits to master since this release
2.2.0
8447c4d
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Learn about vigilant mode.

Added

  • Included the newest nf-core template (version 2.2)
  • Adjustment of the README, including all contributors
  • Inclusion of the PSMs files (tsv format) per replicates in results/PSMs
  • Include check-in WorkflowMhcquant, to determine if the allele and vcf sheet has been provided under specific circumstances

Fixed

  • Changed parameters in the nextflow_schema.json to be in coherence with the nextflow.config
  • Error that was raised in generate_proteins_from_vcf
  • Problems that were detected in predict_possible_class1_neoepitopes and predict_possible_class2_neoepitopes
  • Error that occurred in mhcnuggets_predictneoepitopesclass2 (faulty container set up)

Dependencies

Dependency Old version New version
fred2 2.0.6 2.0.7
Assets 2
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