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dev -> Master for 2.0.0 release #83

Merged
merged 861 commits into from
Oct 24, 2022
Merged

dev -> Master for 2.0.0 release #83

merged 861 commits into from
Oct 24, 2022

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edmundmiller
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edmundmiller and others added 30 commits February 23, 2022 22:21
Since the docker image uses an old version of dREG it still has
"peakcalling" as the script.
Danko-Lab/dREG@b3038b8
IDK if this works because it's broken on my local cluster
Gotta keep 'em seperated.
Hey!
This prevents changing the tag_dir, which should fix caching of
findPeaks and makeucscfile.
UCSC Failed with a weird un-linked library issue.
Update to DSL2 and add in Transcript Identification
fix(multiqc): Remove GROHMM output which may not be there
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edmundmiller and others added 8 commits October 21, 2022 09:56
Co-authored-by: mahesh-panchal <[email protected]>
Co-authored-by: Mahesh Binzer-Panchal <[email protected]>
Co-authored-by: mahesh-panchal <[email protected]>
Subworkflows should never use first() on the end of .versions. We either
don't use any operator and leave it to the unique() -> unique{ it.text }
operator before the collectFile operation before MQC, or subworkflows
use .versions.unique{ it.text }

Co-authored-by: mahesh-panchal <[email protected]>
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7 participants