Important! Template update for nf-core/tools v3.0.1 #3036
Triggered via pull request
October 10, 2024 08:11
maxulysse
Status
Cancelled
Total duration
17m 50s
Artifacts
–
Annotations
75 errors and 47 warnings
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Test pipeline with default settings.Params: default:
Test pipeline with default settings#L1
Assertion failed:
2 of 2 assertions failed
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tests/default.nf.test docker NF-24.04.2
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tests/default.nf.test docker NF-24.04.2
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tests/salmon.nf.test docker NF-latest-everything
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tests/salmon.nf.test docker NF-latest-everything
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tests/kallisto.nf.test docker NF-latest-everything
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tests/kallisto.nf.test docker NF-latest-everything
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tests/kallisto.nf.test docker NF-24.04.2
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tests/kallisto.nf.test docker NF-24.04.2
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tests/salmon.nf.test docker NF-24.04.2
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tests/salmon.nf.test docker NF-24.04.2
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Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem:
Test pipeline with STAR aligner and RSEM for quantification#L1
groovy.lang.MissingMethodException: No signature of method: star_rsem_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/e9ed2c3496454a69937adc9eb340c688/output, ...]
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Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem - stub:
Test pipeline with STAR aligner and RSEM for quantification#L1
groovy.lang.MissingMethodException: No signature of method: star_rsem_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/f0d7229c27866570775b014cf52983b8/output, ...]
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tests/star_rsem.nf.test docker NF-24.04.2
Process completed with exit code 1.
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tests/star_rsem.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline by skipping QC options.Params: --skip_qc:
Test pipeline by skipping QC options#L1
groovy.lang.MissingMethodException: No signature of method: skip_qc_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/81b5f7e909274c5d96b1b6a54795de7e/output, ...]
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Test pipeline by skipping QC options.Params: --skip_qc - stub:
Test pipeline by skipping QC options#L1
groovy.lang.MissingMethodException: No signature of method: skip_qc_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/f952ad2cef004aaea6f72b21611b3304/output, ...]
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tests/skip_qc.nf.test docker NF-latest-everything
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tests/skip_qc.nf.test docker NF-latest-everything
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Test pipeline by skipping QC options.Params: --skip_qc:
Test pipeline by skipping QC options#L1
groovy.lang.MissingMethodException: No signature of method: skip_qc_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/81b5f7e909274c5d96b1b6a54795de7e/output, ...]
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Test pipeline by skipping QC options.Params: --skip_qc - stub:
Test pipeline by skipping QC options#L1
groovy.lang.MissingMethodException: No signature of method: skip_qc_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/f952ad2cef004aaea6f72b21611b3304/output, ...]
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tests/skip_qc.nf.test docker NF-24.04.2
Process completed with exit code 1.
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tests/skip_qc.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline with HISAT2 aligner.Params: --aligner hisat2:
Test pipeline with HISAT2 aligner#L1
groovy.lang.MissingMethodException: No signature of method: hisat2_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/4d18bc7de18683904029cbca021c32d2/output, ...]
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Test pipeline with HISAT2 aligner.Params: --aligner hisat2 - stub:
Test pipeline with HISAT2 aligner#L1
groovy.lang.MissingMethodException: No signature of method: hisat2_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/3c3e5e5f2be7f195232887cd92f139dc/output, ...]
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Test pipeline with HISAT2 aligner.Params: --aligner hisat2:
Test pipeline with HISAT2 aligner#L1
groovy.lang.MissingMethodException: No signature of method: hisat2_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/4d18bc7de18683904029cbca021c32d2/output, ...]
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Test pipeline with HISAT2 aligner.Params: --aligner hisat2 - stub:
Test pipeline with HISAT2 aligner#L1
groovy.lang.MissingMethodException: No signature of method: hisat2_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/3c3e5e5f2be7f195232887cd92f139dc/output, ...]
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tests/hisat2.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/hisat2.nf.test docker NF-latest-everything
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tests/hisat2.nf.test docker NF-24.04.2
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tests/hisat2.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline by skipping trimming options.Params: --skip_trimming:
Test pipeline by skipping trimming options#L1
groovy.lang.MissingMethodException: No signature of method: skip_trimming_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/67ced774c37f32b179d3533f1347c0db/output, ...]
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tests/skip_trimming.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/skip_trimming.nf.test docker NF-latest-everything
Process completed with exit code 1.
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Test pipeline by skipping trimming options.Params: --skip_trimming:
Test pipeline by skipping trimming options#L1
groovy.lang.MissingMethodException: No signature of method: skip_trimming_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/67ced774c37f32b179d3533f1347c0db/output, ...]
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tests/skip_trimming.nf.test docker NF-24.04.2
Process completed with exit code 1.
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tests/skip_trimming.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90:
Test pipeline with a minimum mapped read threshold of 90#L1
groovy.lang.MissingMethodException: No signature of method: min_mapped_reads_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/716928385ff6315bd23e989a7cf7e4a1/output, ...]
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Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90 - stub:
Test pipeline with a minimum mapped read threshold of 90#L1
groovy.lang.MissingMethodException: No signature of method: min_mapped_reads_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/80f706261adbdfe9ea16a6a9f6ee16f1/output, ...]
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Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem:
Test pipeline with STAR aligner and RSEM for quantification#L1
groovy.lang.MissingMethodException: No signature of method: star_rsem_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/e9ed2c3496454a69937adc9eb340c688/output, ...]
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Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem - stub:
Test pipeline with STAR aligner and RSEM for quantification#L1
groovy.lang.MissingMethodException: No signature of method: star_rsem_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/f0d7229c27866570775b014cf52983b8/output, ...]
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Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90:
Test pipeline with a minimum mapped read threshold of 90#L1
groovy.lang.MissingMethodException: No signature of method: min_mapped_reads_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/716928385ff6315bd23e989a7cf7e4a1/output, ...]
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Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90 - stub:
Test pipeline with a minimum mapped read threshold of 90#L1
groovy.lang.MissingMethodException: No signature of method: min_mapped_reads_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/80f706261adbdfe9ea16a6a9f6ee16f1/output, ...]
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tests/star_rsem.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/star_rsem.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/min_mapped_reads.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/min_mapped_reads.nf.test docker NF-latest-everything
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tests/min_mapped_reads.nf.test docker NF-24.04.2
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tests/min_mapped_reads.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false:
Test pipeline without a group type for featureCounts#L1
Assertion failed:
1 of 2 assertions failed
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tests/featurecounts_group_type.nf.test docker NF-24.04.2
Process completed with exit code 1.
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tests/featurecounts_group_type.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline with default settings.Params: default:
Test pipeline with default settings#L1
Assertion failed:
1 of 2 assertions failed
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tests/default.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/default.nf.test docker NF-latest-everything
Process completed with exit code 1.
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Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false:
Test pipeline without a group type for featureCounts#L1
Assertion failed:
1 of 2 assertions failed
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
Process completed with exit code 1.
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
Process completed with exit code 1.
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Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna:
Test pipeline with ribosomal RNA removal#L1
groovy.lang.MissingMethodException: No signature of method: remove_ribo_rna_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/24a1e6e4fae5e89ee40055637c1d558b/output, ...]
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Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna - stub:
Test pipeline with ribosomal RNA removal#L1
groovy.lang.MissingMethodException: No signature of method: remove_ribo_rna_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/9850e8cd6173f7f9513c08fb3f75026d/output, ...]
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tests/remove_ribo_rna.nf.test docker NF-24.04.2
Process completed with exit code 1.
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tests/remove_ribo_rna.nf.test docker NF-24.04.2
Process completed with exit code 1.
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Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna:
Test pipeline with ribosomal RNA removal#L1
groovy.lang.MissingMethodException: No signature of method: remove_ribo_rna_nf$_run_closure1$_closure2.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/24a1e6e4fae5e89ee40055637c1d558b/output, ...]
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Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna - stub:
Test pipeline with ribosomal RNA removal#L1
groovy.lang.MissingMethodException: No signature of method: remove_ribo_rna_nf$_run_closure1$_closure3.getAllFilesFromDir() is applicable for argument types: (org.codehaus.groovy.runtime.GStringImpl, Boolean, ArrayList, null) values: [/home/runner/work/rnaseq/rnaseq/~/tests/9850e8cd6173f7f9513c08fb3f75026d/output, ...]
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-1401' exists
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
The operation was canceled.
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
Process completed with exit code 1.
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/umitools/extract/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/multiqc/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/fastqc/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/default.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/salmon.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/kallisto.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/kallisto.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/salmon.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/star_rsem.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/hisat2.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/hisat2.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_trimming.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_trimming.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/star_rsem.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/min_mapped_reads.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/min_mapped_reads.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/featurecounts_group_type.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/default.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/remove_ribo_rna.nf.test docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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