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Update usage.md for igenomes warning #1878

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Update usage.md for igenomes warning

Update usage.md for igenomes warning #1878

Run time

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Job Run time
Test HISAT2 with workflow parameters (--skip_qc)
12m 0s
Test HISAT2 with workflow parameters (--skip_qc)
12m 0s
Test HISAT2 with workflow parameters (--hisat2_index false)
14m 34s
Test HISAT2 with workflow parameters (--hisat2_index false)
14m 34s
Test STAR RSEM with workflow parameters (--skip_qc)
14m 37s
Test STAR RSEM with workflow parameters (--skip_qc)
14m 37s
Test STAR RSEM with workflow parameters (--rsem_index false)
21m 59s
Test STAR RSEM with workflow parameters (--rsem_index false)
21m 59s
Test Salmon with workflow parameters (--skip_qc)
21m 18s
Test Salmon with workflow parameters (--skip_qc)
21m 18s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
8m 30s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
8m 30s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
26m 34s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
26m 34s
Test STAR Salmon with workflow parameters (--skip_qc)
19m 49s
Test STAR Salmon with workflow parameters (--skip_qc)
19m 49s
Test STAR Salmon with workflow parameters (--skip_trimming)
24m 53s
Test STAR Salmon with workflow parameters (--skip_trimming)
24m 53s
Test STAR Salmon with workflow parameters (--gtf false)
25m 21s
Test STAR Salmon with workflow parameters (--gtf false)
25m 21s
Test STAR Salmon with workflow parameters (--star_index false)
21m 17s
Test STAR Salmon with workflow parameters (--star_index false)
21m 17s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
22m 6s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
22m 6s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
19m 55s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
19m 55s
Test STAR Salmon with workflow parameters (--with_umi)
22m 5s
Test STAR Salmon with workflow parameters (--with_umi)
22m 5s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
22m 46s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
22m 46s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
44m 34s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
44m 34s
Test STAR Salmon with workflow parameters (--bam_csi_index)
27m 11s
Test STAR Salmon with workflow parameters (--bam_csi_index)
27m 11s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
21m 19s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
21m 19s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
25m 42s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
25m 42s
Test STAR Salmon with workflow parameters (--trimmer fastp)
24m 15s
Test STAR Salmon with workflow parameters (--trimmer fastp)
24m 15s
Run pipeline with test data (23.04.0)
1m 36s
Run pipeline with test data (23.04.0)
20m 24s
Run pipeline with test data (latest-everything)
1m 8s
Run pipeline with test data (latest-everything)
21m 30s
15h 26m 8s