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Reorganise local modules into subfolder/main.nf for consistency #1900

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Reorganise local modules into subfolder/main.nf for consistency

Reorganise local modules into subfolder/main.nf for consistency #1900

Run time

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Job Run time
Run pipeline with test data (23.04.0)
21m 45s
Test STAR Salmon with workflow parameters (--skip_qc)
15m 7s
Run pipeline with test data (latest-everything)
20m 21s
Test HISAT2 with workflow parameters (--skip_qc)
9m 14s
Test STAR Salmon with workflow parameters (--skip_trimming)
24m 45s
Test Salmon with workflow parameters (--skip_qc)
16m 11s
Test STAR Salmon with workflow parameters (--gtf false)
27m 37s
Test HISAT2 with workflow parameters (--hisat2_index false)
15m 4s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
7m 50s
Test STAR RSEM with workflow parameters (--skip_qc)
13m 41s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
20m 15s
Test STAR Salmon with workflow parameters (--star_index false)
26m 10s
Test STAR RSEM with workflow parameters (--rsem_index false)
22m 6s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
26m 3s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
25m 56s
Test STAR Salmon with workflow parameters (--with_umi)
28m 48s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
21m 41s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
49m 43s
Test STAR Salmon with workflow parameters (--bam_csi_index)
21m 54s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
20m 38s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
21m 37s
Test STAR Salmon with workflow parameters (--trimmer fastp)
20m 51s
7h 57m 17s