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Overhaul strandedness detection / comparison #2625

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Overhaul strandedness detection / comparison

Overhaul strandedness detection / comparison #2625

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9s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything
1s
tests/min_mapped_reads.main.nf.test docker NF-latest-everything
1s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything
1s
tests/featurecounts.main.nf.test docker NF-latest-everything
1s
tests/default.main.nf.test docker NF-latest-everything
1s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything
8s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-latest-everything
3s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything
2s
modules/local/gtf2bed/tests/main.nf.test docker NF-latest-everything
2s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything
1s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
1s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything
1s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything
1s
modules/local/gtf_filter/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything
1s
tests/remove_ribo_rna.main.nf.test docker NF-latest-everything
1s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything
1s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything
1s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
1s
tests/kallisto.main.nf.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
1s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
1s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
1s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything
1s
tests/salmon.main.nf.test docker NF-latest-everything
1s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything
1s
tests/skip_qc.main.nf.test docker NF-latest-everything
1s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything
1s
tests/skip_trimming.main.nf.test docker NF-latest-everything
1s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything
1s
modules/local/deseq2_qc/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything
1s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything
1s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04
1m 17s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
1m 21s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04
1m 1s
tests/min_mapped_reads.main.nf.test docker NF-23.04
33s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04
56s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-23.04
37s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04
31s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04
48s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-23.04
36s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-23.04
1m 1s
tests/featurecounts.main.nf.test docker NF-23.04
35s
tests/default.main.nf.test docker NF-23.04
35s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-23.04
40s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04
50s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04
1m 13s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-23.04
51s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04
48s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-23.04
33s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-23.04
43s
modules/local/gtf2bed/tests/main.nf.test docker NF-23.04
29s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-23.04
26s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04
1m 6s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
59s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04
1m 0s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04
1m 1s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-23.04
2m 5s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-23.04
49s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
39s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-23.04
34s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04
46s
modules/nf-core/fastp/tests/main.nf.test docker NF-23.04
1m 35s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-23.04
55s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
47s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-23.04
1m 24s
modules/nf-core/gffread/tests/main.nf.test docker NF-23.04
57s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
2m 2s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04
46s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-23.04
1m 10s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04
45s
modules/local/gtf_filter/tests/main.nf.test docker NF-23.04
53s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04
44s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-23.04
2m 3s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-23.04
45s
tests/remove_ribo_rna.main.nf.test docker NF-23.04
15s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04
31s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04
22s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04
1m 7s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
45s
tests/kallisto.main.nf.nf.test docker NF-23.04
35s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-23.04
42s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
44s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04
2m 5s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-23.04
55s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
43s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
56s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-23.04
55s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
40s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04
53s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-23.04
47s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-23.04
53s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-23.04
45s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
21s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04
1m 6s
subworkflows/local/align_star/tests/main.nf.test docker NF-23.04
1m 5s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04
1m 24s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
56s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04
36s
tests/salmon.main.nf.test docker NF-23.04
16s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04
38s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-23.04
43s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04
1m 9s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04
45s
tests/skip_qc.main.nf.test docker NF-23.04
27s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04
1m 10s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-23.04
1m 23s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-23.04
31s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04
42s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-23.04
44s
modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04
1m 33s
tests/skip_trimming.main.nf.test docker NF-23.04
9s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04
2m 3s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04
48s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-23.04
54s
modules/nf-core/star/align/tests/main.nf.test docker NF-23.04
1m 10s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04
53s
modules/local/deseq2_qc/tests/main.nf.test docker NF-23.04
1m 1s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-23.04
1m 10s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-23.04
1m 4s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04
35s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04
1m 1s
confirm-pass
1s
1h 22m 50s