Various MultiQC issues: FastQC sections for raw and trimmed reads // umi-tools dedup and extraction plots, custom content styling. #2715
pinin4fjordsAnnotations
30 errors and 60 warnings
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/salmon.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/salmon.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/kallisto.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/kallisto.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/skip_qc.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/skip_qc.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/hisat2.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/hisat2.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/min_mapped_reads.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/min_mapped_reads.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/star_rsem.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/skip_trimming.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/star_rsem.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/featurecounts_group_type.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/default.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/skip_trimming.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/default.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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tests/remove_ribo_rna.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/salmon.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/salmon.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/salmon.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/salmon.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/kallisto.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/kallisto.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/kallisto.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/kallisto.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/skip_qc.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/skip_qc.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/hisat2.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/hisat2.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/hisat2.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/hisat2.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/min_mapped_reads.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/min_mapped_reads.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/min_mapped_reads.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/min_mapped_reads.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/star_rsem.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/star_rsem.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/skip_trimming.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_trimming.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/star_rsem.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/star_rsem.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/featurecounts_group_type.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/featurecounts_group_type.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/default.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/default.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/skip_trimming.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_trimming.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/default.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/default.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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tests/remove_ribo_rna.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/remove_ribo_rna.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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