Merge pull request #673 from drpatelh/updates

Bump version to v3.3

CHANGELOG.md

@@ -3,23 +3,22 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unpublished Version / DEV]
+## [[3.3](https://github.com/nf-core/rnaseq/releases/tag/3.3)] - 2021-07-26
 
 ### Enhancements & fixes
 
 * Updated pipeline template to [nf-core/tools 2.0.1](https://github.com/nf-core/tools/releases/tag/2.0.1)
 * [[#668](https://github.com/nf-core/rnaseq/issues/668)] - Salmon quant with UMI-tools does not work
 * [[#674](https://github.com/nf-core/rnaseq/issues/674)] - Launch pipeline regex fails
 
-### Parameters
-
 ### Software dependencies
 
 Note, since the pipeline is now using Nextflow DSL2, each process will be run with its own [Biocontainer](https://biocontainers.pro/#/registry). This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference.
 
 | Dependency  | Old version | New version |
 |-------------|-------------|-------------|
 | `umi_tools` | 1.1.1       | 1.1.2       |
+| `samtools`  | 1.10        | 1.12        |
 
 > **NB:** Dependency has been __updated__ if both old and new version information is present.
 > **NB:** Dependency has been __added__ if just the new version information is present.

nextflow.config

@@ -221,7 +221,7 @@ manifest {
     description     = 'Nextflow RNA-Seq analysis pipeline, part of the nf-core community.'
     mainScript      = 'main.nf'
     nextflowVersion = '!>=21.04.0'
-    version         = '3.3dev'
+    version         = '3.3'
 }
 
 // Function to ensure that resource requirements don't go beyond