Merge pull request #1393 from maxulysse/patch_registry

patch bedtools/genomecov to use quay.io to solve issue with nf-core download
nf-core · Sep 30, 2024 · fcbfa1b · fcbfa1b
2 parents e6e85ef + 894a770
commit fcbfa1b
Show file tree

Hide file tree

Showing 4 changed files with 42 additions and 3 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [PR #1386](https://github.com/nf-core/rnaseq/pull/1386) - Bump pipeline version to 3.16.0dev
 - [PR #1388](https://github.com/nf-core/rnaseq/pull/1388) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
 - [PR #1389](https://github.com/nf-core/rnaseq/pull/1389) - Update animated subway map
+- [PR #1393](https://github.com/nf-core/rnaseq/pull/1393) - Use quay.io for bedtools/genomecov to solve issue with nf-core download
 
 ### Parameters
 

diff --git a/modules.json b/modules.json
@@ -13,7 +13,8 @@
                     "bedtools/genomecov": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff"
                     },
                     "bracken/bracken": {
                         "branch": "master",

diff --git a/modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff b/modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff
diff --git a/modules/nf-core/bedtools/genomecov/main.nf b/modules/nf-core/bedtools/genomecov/main.nf