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patch bedtools/genomecov to use quay.io to solve issue with nf-core download #1393

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merged 3 commits into from
Sep 30, 2024
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patch bedtools/genomecov to use quay.io to solve issue with nf-core download #1393

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f6522c8
patch bedtools/genomecov to use quay.io to solve issue with nf-core d…
maxulysse Sep 30, 2024
5c61ed3
use url for singularity
maxulysse Sep 30, 2024
894a770
use proper url for singularity
maxulysse Sep 30, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [PR #1386](https://github.com/nf-core/rnaseq/pull/1386) - Bump pipeline version to 3.16.0dev
- [PR #1388](https://github.com/nf-core/rnaseq/pull/1388) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
- [PR #1389](https://github.com/nf-core/rnaseq/pull/1389) - Update animated subway map
- [PR #1393](https://github.com/nf-core/rnaseq/pull/1393) - Use quay.io for bedtools/genomecov to solve issue with nf-core download

### Parameters

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3 changes: 2 additions & 1 deletion modules.json
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Expand Up @@ -13,7 +13,8 @@
"bedtools/genomecov": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": ["modules"]
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff"
},
"bracken/bracken": {
"branch": "master",
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37 changes: 37 additions & 0 deletions modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff
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4 changes: 2 additions & 2 deletions modules/nf-core/bedtools/genomecov/main.nf
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