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updated README.md
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daisymut committed Nov 20, 2023
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## Pipeline output

To see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/sammyseq/results) tab on the nf-core website pipeline page.
<!-- TODO uncomment after first release: To see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/sammyseq/results) tab on the nf-core website pipeline page. -->

For more details about the output files and reports, please refer to the
[output documentation](https://nf-co.re/sammyseq/output).

## Credits

nf-core/sammyseq was written by Margherita Mutarelli and Lucio Di Filippo and was based on the original pipeline developed _in-house_ by SAMMY-seq creators. <!-- TODO retreive all names and github usernames -->
nf-core/sammyseq was written by Lucio Di Filippo and Margherita Mutarelli and was based on the original pipeline developed _in-house_ by SAMMY-seq creators. <!-- TODO retreive all names and github usernames -->

We thank the following people for their extensive assistance in the development of this pipeline:

<!-- TODO nf-core: If applicable, make list of people who have also contributed -->

## Acknowledgements

The initial development of this pipeline was funded thanks to the projects Progetti@CNR Myo-CoV-2, AFM Téléthon EDMD-GenomeSCAN B53C22009260007 and PIR01_00011 I.Bi.S.Co. Infrastruttura per Big data e Scientific COmputing (PON 2014-2020).
The development of this pipeline was made possible thanks to the projects Progetti@CNR Myo-CoV-2 B93C20046330005, AFM Téléthon EDMD-GenomeSCAN B53C22009260007 and PIR01_00011 I.Bi.S.Co. Infrastruttura per Big data e Scientific COmputing (PON 2014-2020).

## Contributions and Support

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<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
<!-- If you use nf-core/sammyseq for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->

<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->

An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.

You can cite the `nf-core` publication as follows:
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