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Split variantannotation in its own pipeline and import it #1561
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Relevant code has been copy pasted from |
cf: https://github.com/maxulysse/nf-core_variantannotation My idea was to split out the pipeline specific params in Following that idea, I similarly split out the pipeline specifics from For the All the pipeline only relevant that should be imported into the other pipeline is in my opinion, whatever we have in And then dealing nicely with importing all in the main.nf. So basically I would want a nf-core tools command like
EDIT: Now left with
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PR checklist
nf-core lint
).nf-test test tests/ --verbose --profile +docker
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).