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nictru committed Jun 13, 2024
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## Introduction

:::warning
This pipeline has been deprecated on June 13, 2024 because it did not meet the quality standards of nf-core.
Please use the [nf-core/scdownstream](https://nf-co.re/scdownstream) pipeline instead.
:::
> [!WARNING]
> This pipeline has been deprecated on June 13, 2024 because it did not meet the quality standards of nf-core.
> Please use the [nf-core/scdownstream](https://nf-co.re/scdownstream) pipeline instead.
**nf-core/scflow** is a bioinformatics pipeline for scalable, reproducible, best-practice analyses of single-cell/nuclei RNA-sequencing data.

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