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Hi @grst ,
Started running the tool with public data to get the gist of the tool and figure out how to work with the "input csv" for proper implementation.
Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
cellranger multi
cellranger vdj
cellranger multi
cellranger atac
(for only scATAC)cellranger-arc
(RNA + ATAC) -> merged in Cellranger arc #217cellranger multi
Seems like support for cellranger multi will get us pretty far!
Once the alignment routes are implemented, we should also make the output of the workflow more user-friendly:
CC @heylf @fmalmeida
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