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Fix CI issue #81

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merged 1 commit into from
May 20, 2024
Merged

Fix CI issue #81

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18 changes: 3 additions & 15 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -21,20 +21,6 @@ concurrency:
cancel-in-progress: true

jobs:
define_nxf_versions:
name: Choose nextflow versions to test against depending on target branch
runs-on: ubuntu-latest
outputs:
matrix: ${{ steps.nxf_versions.outputs.matrix }}
steps:
- id: nxf_versions
run: |
if [[ "${{ github.event_name }}" == "pull_request" && "${{ github.base_ref }}" == "dev" && "${{ matrix.NXF_VER }}" != "latest-everything" ]]; then
echo matrix='["latest-everything"]' | tee -a $GITHUB_OUTPUT
else
echo matrix='["latest-everything", "23.04.0"]' | tee -a $GITHUB_OUTPUT
fi

test:
name: Run pipeline with test data
# Only run on push if this is the nf-core dev branch (merged PRs)
Expand All @@ -43,7 +29,9 @@ jobs:
strategy:
fail-fast: false
matrix:
NXF_VER: ${{ fromJson(needs.define_nxf_versions.outputs.matrix) }}
NXF_VER:
- "23.04.0"
- "latest-everything"
test:
- tests/pipeline/test_spaceranger_ffpe_v1.nf.test
- tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test
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