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Draft: add metaphlan4 #1026

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Draft: add metaphlan4

Draft: add metaphlan4 #1026

Triggered via pull request July 6, 2023 13:20
@LilyAnderssonLeeLilyAnderssonLee
opened #317
add_metaphlan4
Status Failure
Total duration 1h 18m 15s
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ci.yml

on: pull_request
Matrix: Test KrakenUniq with workflow parameters
Matrix: Test MALT with workflow parameters
Matrix: Test mOTUs with workflow parameters
Matrix: Run pipeline with test data
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19 errors and 1 warning
Run pipeline with test data (22.10.1, --preprocessing_qc_tool falco)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --preprocessing_qc_tool falco" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:20:57 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:16 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:33 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (22.10.1, --shortread_qc_tool adapterremoval)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool adapterremoval" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:20:57 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:15 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:35 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (latest-everything, --preprocessing_qc_tool falco)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --preprocessing_qc_tool falco" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:20:59 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:18 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:35 GMT+0000 (Coordinated Universal Time)
Test MALT with workflow parameters (latest-everything)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_nothing,docker --run_malt --input 'https://github.com/nf-core/test-datasets/raw/taxprofiler/samplesheet_shortreadsonly.csv' --outdir ./results" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:45 GMT+0000 (Coordinated Universal Time)
Test MALT with workflow parameters (22.10.1)
The job was canceled because "latest-everything" failed.
Test MALT with workflow parameters (22.10.1)
The operation was canceled.
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool bbduk)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool bbduk" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:06 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:25 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:48 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (22.10.1, --shortread_complexityfilter_tool prinseqplusplus)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool prinseqplusplus" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:07 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:29 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:49 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (22.10.1, --shortread_qc_tool fastp)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool fastp" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:30 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:52 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool prinseqplusplus)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool prinseqplusplus" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:30 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:52 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (latest-everything, --shortread_qc_tool fastp)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool fastp" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:27 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:48 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (22.10.1, --shortread_complexityfilter_tool bbduk)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool bbduk" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:12 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:34 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:21:58 GMT+0000 (Coordinated Universal Time)
Run pipeline with test data (latest-everything, --shortread_qc_tool adapterremoval)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool adapterremoval" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:06 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:21:32 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:22:00 GMT+0000 (Coordinated Universal Time)
Test KrakenUniq with workflow parameters (22.10.1)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --outdir ./results" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:21:01 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:28:55 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:42:54 GMT+0000 (Coordinated Universal Time)
Test KrakenUniq with workflow parameters (latest-everything)
The job was canceled because "_22_10_1" failed.
Test KrakenUniq with workflow parameters (latest-everything)
The operation was canceled.
Test mOTUs with workflow parameters (latest-everything)
Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:41:12 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 14:00:28 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 14:19:22 GMT+0000 (Coordinated Universal Time)
Test mOTUs with workflow parameters (22.10.1)
The job was canceled because "latest-everything" failed.
Test mOTUs with workflow parameters (22.10.1)
The operation was canceled.
Test KrakenUniq with workflow parameters (22.10.1)
You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 0 MB