Update ci.yml

correct the definition of db_type for both short and long reads
nf-core · Jun 13, 2024 · 301119a · 301119a
1 parent 547a0aa
commit 301119a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -67,8 +67,8 @@ jobs:
             python downloadDB.py --no-download-progress
             echo 'tool,db_name,db_params,db_type,db_path' > 'database_motus.csv'
             echo "motus,db1_mOTU,,short,db_mOTU" >> 'database_motus.csv'
-            echo "motus,db2_mOTU,prep_long,long,db_mOTU" >> 'database_motus.csv'
-            echo "motus,db3_mOTU,,both,db_mOTU" >> 'database_motus.csv'
+            echo "motus,db2_mOTU,,long,db_mOTU" >> 'database_motus.csv'
+            echo "motus,db3_mOTU,,\"short,long\",db_mOTU" >> 'database_motus.csv'
             nextflow run ${GITHUB_WORKSPACE} -profile docker,${{ matrix.tags }} --databases ./database_motus.csv --outdir ./results_${{ matrix.tags }};
           else
             nextflow run ${GITHUB_WORKSPACE} -profile docker,${{ matrix.tags }} --outdir ./results_${{ matrix.tags }};