Merge pull request #334 from LilyAnderssonLee/falco_mem

Change falco process into medium, solve memory issue
nf-core · Jul 24, 2023 · 4627208 · 4627208
2 parents 47095d5 + ae543dc
commit 4627208
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 0 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -33,6 +33,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#307](https://github.com/nf-core/taxprofiler/pull/307) Fix databases being sometimes associated with the wrong tool (e.g. Kaiju) (fix by @jfy133)
 - [#313](https://github.com/nf-core/taxprofiler/pull/304) Fix pipeline not providing error when database sheet does not have a header (♥ to @noah472 for reporting, fix by @jfy133)
 - [#330](https://github.com/nf-core/taxprofiler/pull/330) Added better tagging to allow disambiguation of Kraken2 steps of Kraken2 vs Bracken (♥ to @MajoroMask for requesting, added by @jfy133)
+- [#334](https://github.com/nf-core/taxprofiler/pull/334) Increase the memory of the FALCO process to 4GB (fix by @LilyAnderssonLee)
 
 ### `Dependencies`
 

diff --git a/conf/base.config b/conf/base.config
@@ -83,4 +83,9 @@ process {
         memory = { check_max( 6.GB * task.attempt, 'memory'  ) }
         time   = { check_max( 4.h  * task.attempt, 'time'    ) }
     }
+    withName: FALCO {
+        cpus   = { check_max( 6                  , 'cpus'    ) }
+        memory = { check_max( 4.GB * task.attempt, 'memory'  ) }
+        time   = { check_max( 4.h  * task.attempt, 'time'    ) }
+    }
 }