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After comments from MAxime
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jfy133 committed Jul 25, 2023
1 parent 75ba693 commit 91fc6f7
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions subworkflows/local/profiling.nf
Original file line number Diff line number Diff line change
Expand Up @@ -74,8 +74,7 @@ workflow PROFILING {
// as we don't run run on a per-sample basis due to huge datbaases
// so all samples are in one run and so sample-specific metadata
// unnecessary. Set as database name to prevent `null` job ID and prefix.
def temp_meta = [ id: db_meta.db_name ]
def new_meta = db_meta + temp_meta
def new_meta = db_meta + [ id: db_meta.db_name ]

// Extend database parameters to specify whether to save alignments or not
def sam_format = params.malt_save_reads ? ' --alignments ./ -za false' : ""
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