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No need to check outdir for existence - Nextflow can create it on demand
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Signed-off-by: Rob Syme <[email protected]>
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robsyme committed Jul 7, 2023
1 parent 078537b commit 9fbab80
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflows/taxprofiler.nf
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ WorkflowTaxprofiler.initialise(params, log)

// Check input path parameters to see if they exist
def checkPathParamList = [ params.input, params.genome, params.databases,
params.outdir, params.longread_hostremoval_index,
params.longread_hostremoval_index,
params.hostremoval_reference, params.shortread_hostremoval_index,
params.multiqc_config, params.shortread_qc_adapterlist,
params.krona_taxonomy_directory,
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