Merge pull request #432 from genomic-medicine-sweden/update_kaiju_module

Update kaiju2table module
nf-core · Jan 24, 2024 · c301bd9 · c301bd9
2 parents 1f34a9a + 913a2d7
commit c301bd9
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,10 +9,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- [#431](https://github.com/nf-core/modules/pull/4781#event-11555493525) Updated kaiju2table module to report taxon names (fix by @Joon-Klaps)
 - [#430](https://github.com/nf-core/taxprofiler/pull/430) Fix the fastq output in the module LONGREAD_HOSTREMOVAL. (fix by @LilyAnderssonLee)
 
 ### `Dependencies`
 
+| Tool  | Previous version | New version |
+| ----- | ---------------- | ----------- |
+| kaiju | 1.8.2            | 1.10.0      |
+
 ### `Deprecated`
 
 ## v1.1.3 - Augmented Akita Patch [2024-01-12]

diff --git a/modules.json b/modules.json
@@ -103,17 +103,17 @@
                     },
                     "kaiju/kaiju": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3db50674956b1fb3741a44eb917458d788a50197",
                         "installed_by": ["modules"]
                     },
                     "kaiju/kaiju2krona": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3db50674956b1fb3741a44eb917458d788a50197",
                         "installed_by": ["modules"]
                     },
                     "kaiju/kaiju2table": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3db50674956b1fb3741a44eb917458d788a50197",
                         "installed_by": ["modules"]
                     },
                     "kmcp/profile": {

diff --git a/modules/nf-core/kaiju/kaiju/environment.yml b/modules/nf-core/kaiju/kaiju/environment.yml
diff --git a/modules/nf-core/kaiju/kaiju/main.nf b/modules/nf-core/kaiju/kaiju/main.nf
diff --git a/modules/nf-core/kaiju/kaiju/meta.yml b/modules/nf-core/kaiju/kaiju/meta.yml
diff --git a/modules/nf-core/kaiju/kaiju/tests/main.nf.test b/modules/nf-core/kaiju/kaiju/tests/main.nf.test
diff --git a/modules/nf-core/kaiju/kaiju/tests/main.nf.test.snap b/modules/nf-core/kaiju/kaiju/tests/main.nf.test.snap
diff --git a/modules/nf-core/kaiju/kaiju/tests/tags.yml b/modules/nf-core/kaiju/kaiju/tests/tags.yml
diff --git a/modules/nf-core/kaiju/kaiju2krona/environment.yml b/modules/nf-core/kaiju/kaiju2krona/environment.yml
diff --git a/modules/nf-core/kaiju/kaiju2krona/main.nf b/modules/nf-core/kaiju/kaiju2krona/main.nf
diff --git a/modules/nf-core/kaiju/kaiju2krona/meta.yml b/modules/nf-core/kaiju/kaiju2krona/meta.yml