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Update docs/output.md
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Co-authored-by: James A. Fellows Yates <[email protected]>
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LilyAnderssonLee and jfy133 authored Jul 31, 2024
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Expand Up @@ -181,7 +181,7 @@ We do **not** recommend using Porechop if you are already trimming the adapters

### Porechop_ABI

[Porechop_ABI](https://github.com/bonsai-team/Porechop_ABI) is an extension of [Porechop](https://github.com/rrwick/Porechop). Porechop_ABI does not use any external knowledge or database for the adapters. Adapters were discovered directly from the reads using approximate k-mers counting and assembly. Then these sequences can be used for trimming, using all standard Porechop options. The software is able to report a combination of distinct sequences if a mix of adapters is used. It can also be used to check whether a dataset has already been trimmed out or not, or to find leftover adapters in datasets that have been previously processed with Guppy.
[Porechop_ABI](https://github.com/bonsai-team/Porechop_ABI) is an extension of [Porechop](https://github.com/rrwick/Porechop). Porechop_ABI does not use any external knowledge or database for the adapters. Adapters are discovered directly from the reads using approximate k-mers counting and assembly. Then these sequences can be used for trimming, using all standard Porechop options. The software is able to report a combination of distinct sequences if a mix of adapters is used. It can also be used to check whether a dataset has already been trimmed out or not, or to find leftover adapters in datasets that have been previously processed with Guppy.

<details markdown="1">
<summary>Output files</summary>
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