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Patch release V1.1.1 #388

Merged
merged 54 commits into from
Oct 11, 2023
Merged

Patch release V1.1.1 #388

merged 54 commits into from
Oct 11, 2023

Commits on Sep 19, 2023

  1. bump version to v1.2.0dev

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 19, 2023
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  2. Merge branch 'dev' into bump_versions

    @jfy133
    jfy133 authored Sep 19, 2023
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  3. Merge pull request #376 from LilyAnderssonLee/bump_versions 

    bump version to v1.2.0dev
    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 19, 2023
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  4. Correct tag descriptions

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 19, 2023
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  5. Merge pull request #377 from LilyAnderssonLee/changelog 

    Correct the tag description and links
    @jfy133
    jfy133 authored Sep 19, 2023
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Commits on Sep 20, 2023

  1. Correct git user name

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 20, 2023
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  2. Merge pull request #378 from LilyAnderssonLee/changelog 

    Correct git user name
    @jfy133
    jfy133 authored Sep 20, 2023
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  3. added corrected kraken2 report as output from bracken

    @hkaspersen
    hkaspersen committed Sep 20, 2023
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Commits on Sep 21, 2023

  1. corrected bracken report output definition

    @hkaspersen
    hkaspersen committed Sep 21, 2023
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  2. added line for changes to output

    @hkaspersen
    hkaspersen committed Sep 21, 2023
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  3. Merge branch 'dev' into bracken_output_report_fix

    @jfy133
    jfy133 authored Sep 21, 2023
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Commits on Sep 26, 2023

  1. Template update for nf-core/tools version 2.10

    @nf-core-bot
    nf-core-bot committed Sep 26, 2023
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Commits on Sep 27, 2023

  1. Merge branch 'dev' into nf-core-template-merge-2.10

    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  2. Update modules.json 

    solve the conflicts caused by multiQC version
    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  3. update krakenuniq module to the latest

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  4. Add PR info

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  5. Update WorkflowTaxprofiler.groovy

    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  6. Update main.nf

    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  7. bump the version and add the template update PR

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  8. bump the version

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  9. bump the version

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  10. Merge pull request #380 from nf-core/nf-core-template-merge-2.10 

    Important! Template update for nf-core/tools v2.10
    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  11. Update CHANGELOG.md

    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  12. Merge branch 'dev' into krakenuniq

    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 27, 2023
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  13. add dependencies

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  14. correct PR info

    @LilyAnderssonLee
    LilyAnderssonLee committed Sep 27, 2023
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  15. Update CHANGELOG.md

    @jfy133
    jfy133 authored Sep 27, 2023
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Commits on Sep 28, 2023

  1. Update multiqc_config.yml 

    Correct Wrong links in "assets/multiqc_config.yml.
    @LilyAnderssonLee
    LilyAnderssonLee authored Sep 28, 2023
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  2. Merge pull request #383 from LilyAnderssonLee/krakenuniq 

    update krakenuniq module
    @jfy133
    jfy133 authored Sep 28, 2023
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Commits on Sep 29, 2023

  1. updated bracken module

    @hkaspersen
    hkaspersen committed Sep 29, 2023
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  2. Merge pull request #1 from hkaspersen/master 

    updated bracken module
    @hkaspersen
    hkaspersen authored Sep 29, 2023
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Commits on Sep 30, 2023

  1. corrected bracken output glob

    @hkaspersen
    hkaspersen committed Sep 30, 2023
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  2. Merge branch 'bracken_output_report_fix' of github.com:hkaspersen/tax… 

    …profiler into bracken_output_report_fix
    @hkaspersen
    hkaspersen committed Sep 30, 2023
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Commits on Oct 1, 2023

  1. Merge branch 'dev' into bracken_output_report_fix

    @jfy133
    jfy133 authored Oct 1, 2023
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  2. Update conf/modules.config

    @jfy133
    jfy133 authored Oct 1, 2023
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  3. Update output.md

    @jfy133
    jfy133 authored Oct 1, 2023
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  4. Apply suggestions from code review

    @jfy133
    jfy133 authored Oct 1, 2023
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  5. Merge pull request #379 from hkaspersen/bracken_output_report_fix 

    Bracken output report addition
    @jfy133
    jfy133 authored Oct 1, 2023
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Commits on Oct 3, 2023

  1. update the patch release date

    @LilyAnderssonLee
    LilyAnderssonLee committed Oct 3, 2023
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  2. Merge pull request #389 from LilyAnderssonLee/patchRelease 

    update the patch release date
    @jfy133
    jfy133 authored Oct 3, 2023
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Commits on Oct 6, 2023

  1. Update taxpasta module

    @LilyAnderssonLee
    LilyAnderssonLee committed Oct 6, 2023
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  2. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Oct 6, 2023
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  3. Update CHANGELOG.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @LilyAnderssonLee @jfy133
    LilyAnderssonLee and jfy133 authored Oct 6, 2023
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  4. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Oct 6, 2023
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  5. Add check for taxpasta_add_ and taxonomy

    @jfy133
    jfy133 committed Oct 6, 2023
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  6. Update CHANGELOG.md

    @jfy133
    jfy133 authored Oct 6, 2023
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  7. Merge pull request #392 from nf-core/taxpasta_v0.6.1 

    Update taxpasta module
    @LilyAnderssonLee
    LilyAnderssonLee authored Oct 6, 2023
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Commits on Oct 7, 2023

  1. Update CHANGELOG.md

    @jfy133
    jfy133 authored Oct 7, 2023
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  2. Update workflows/taxprofiler.nf 

    Co-authored-by: Moritz E. Beber <[email protected]>
    @jfy133 @Midnighter
    jfy133 and Midnighter authored Oct 7, 2023
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  3. Merge pull request #393 from nf-core/add-taxpasta-taxdir-check 

    Add taxpasta taxdir check
    @jfy133
    jfy133 authored Oct 7, 2023
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Commits on Oct 8, 2023

  1. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Oct 8, 2023
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Commits on Oct 10, 2023

  1. taxpasta dependency update

    @LilyAnderssonLee
    LilyAnderssonLee committed Oct 10, 2023
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  2. taxpasta dependency update

    @LilyAnderssonLee
    LilyAnderssonLee committed Oct 10, 2023
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  3. Merge pull request #397 from LilyAnderssonLee/dependency 

    taxpasta dependency update
    @LilyAnderssonLee
    LilyAnderssonLee authored Oct 10, 2023
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