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Patch release: 1.1.5 #443

Merged
merged 41 commits into from
Feb 8, 2024
Merged

Patch release: 1.1.5 #443

merged 41 commits into from
Feb 8, 2024

Commits on Jan 25, 2024

  1. Bump 1.1.4 version into dev

    @nf-core-bot
    nf-core-bot committed Jan 25, 2024
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  2. Correct version

    @nf-core-bot
    nf-core-bot committed Jan 25, 2024
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  3. Correct version

    @nf-core-bot
    nf-core-bot committed Jan 25, 2024
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  4. Correct v1.1.5dev

    @nf-core-bot
    nf-core-bot committed Jan 25, 2024
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  5. Merge pull request #436 from genomic-medicine-sweden/bump_release_1.1.4 

    Bump pipeline 1.1.4 version into dev
    @sofstam
    sofstam authored Jan 25, 2024
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  6. add fastp dedup

    @maxibor
    maxibor committed Jan 25, 2024
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  7. Merge branch 'fastp_dedup' into dev

    @maxibor
    maxibor committed Jan 25, 2024
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  8. update changelog

    @maxibor
    maxibor committed Jan 25, 2024
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Commits on Jan 26, 2024

  1. Update CHANGELOG.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @maxibor @jfy133
    maxibor and jfy133 authored Jan 26, 2024
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  2. Update nextflow_schema.json 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @maxibor @jfy133
    maxibor and jfy133 authored Jan 26, 2024
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  3. Update nextflow_schema.json 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @maxibor @jfy133
    maxibor and jfy133 authored Jan 26, 2024
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  4. Include a pre-built kaiju indexes in tutorial.md

    @Joon-Klaps
    Joon-Klaps committed Jan 26, 2024
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  5. update changelog.md

    @Joon-Klaps
    Joon-Klaps committed Jan 26, 2024
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  6. Merge pull request #440 from nf-core/kaiju-prebuilt-indexes 

    Include a pre-built kaiju indexes in tutorial.md
    @Joon-Klaps
    Joon-Klaps authored Jan 26, 2024
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  7. Merge branch 'dev' into dedup

    @sofstam
    sofstam authored Jan 26, 2024
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  8. Prettier

    @sofstam
    sofstam committed Jan 26, 2024
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Commits on Jan 29, 2024

  1. Template update for nf-core/tools version 2.12

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    nf-core-bot committed Jan 29, 2024
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Commits on Feb 1, 2024

  1. Merge branch 'dev' into nf-core-template-merge-2.12

    @sofstam
    sofstam authored Feb 1, 2024
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  2. Fix trailing whitespace

    @sofstam
    sofstam committed Feb 1, 2024
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  3. Amount of left-padding spaces

    @sofstam
    sofstam committed Feb 1, 2024
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  4. Left-padding spaces and trailing whitespace

    @sofstam
    sofstam committed Feb 1, 2024
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  5. Apply suggestions from code review

    @jfy133
    jfy133 authored Feb 1, 2024
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  6. Merge pull request #439 from maxibor/dedup 

    Adding shortread deduplication feature with fastp
    @jfy133
    jfy133 authored Feb 1, 2024
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  7. Fix linting

    @sofstam
    sofstam committed Feb 1, 2024
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  8. Prettier

    @sofstam
    sofstam committed Feb 1, 2024
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  9. Prettier

    @sofstam
    sofstam committed Feb 1, 2024
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  10. Update README.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @sofstam @jfy133
    sofstam and jfy133 authored Feb 1, 2024
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  11. Update nextflow.config 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @sofstam @jfy133
    sofstam and jfy133 authored Feb 1, 2024
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  12. Merge pull request #442 from nf-core/nf-core-template-merge-2.12 

    Template update for nf-core/tools v2.12
    @sofstam
    sofstam authored Feb 1, 2024
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Commits on Feb 3, 2024

  1. Bump centrifuge version to hopefully fix mkfifo errors

    @jfy133
    jfy133 committed Feb 3, 2024
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  2. Update CHANGELOG

    @jfy133
    jfy133 committed Feb 3, 2024
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  3. More Changelog updates

    @jfy133
    jfy133 committed Feb 3, 2024
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  4. Apply suggestions from code review

    @jfy133
    jfy133 authored Feb 3, 2024
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Commits on Feb 5, 2024

  1. Update CHANGELOG.md 

    Co-authored-by: Lili Andersson-Li <[email protected]>
    @jfy133 @LilyAnderssonLee
    jfy133 and LilyAnderssonLee authored Feb 5, 2024
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  2. Kreport friendly container

    @jfy133
    jfy133 committed Feb 5, 2024
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Commits on Feb 6, 2024

  1. Merge pull request #444 from nf-core/centrifuge-update 

    Centrifuge update to address mkfifo clashes
    @jfy133
    jfy133 authored Feb 6, 2024
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Commits on Feb 8, 2024

  1. Bump version

    @sofstam
    sofstam committed Feb 8, 2024
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  2. Update CHANGELOG.md

    @sofstam
    sofstam committed Feb 8, 2024
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  3. Merge pull request #445 from genomic-medicine-sweden/dev 

    Bump version
    @sofstam
    sofstam authored Feb 8, 2024
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  4. Apply suggestions from code review 

    Co-authored-by: Lili Andersson-Li <[email protected]>
    @jfy133 @LilyAnderssonLee
    jfy133 and LilyAnderssonLee authored Feb 8, 2024
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  5. Apply suggestions from code review 

    Co-authored-by: Lili Andersson-Li <[email protected]>
    @jfy133 @LilyAnderssonLee
    jfy133 and LilyAnderssonLee authored Feb 8, 2024
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