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Add nanoq to the pipeline #508

Merged
merged 13 commits into from
Jul 26, 2024
Merged

Add nanoq to the pipeline #508

merged 13 commits into from
Jul 26, 2024

Commits on Jul 11, 2024

  1. Add nanoq to the pipeline

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 11, 2024
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  2. Merge branch 'bouncy-basenji' into nanoq

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 11, 2024
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  3. update the module nanoq

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 11, 2024
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  4. update modules.config

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 11, 2024
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Commits on Jul 12, 2024

  1. Update nextflow_schema.json 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @LilyAnderssonLee @jfy133
    LilyAnderssonLee and jfy133 committed Jul 12, 2024
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  2. Update subworkflows/local/longread_filtering.nf 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @LilyAnderssonLee @jfy133
    LilyAnderssonLee and jfy133 committed Jul 12, 2024
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  3. Update subworkflows/local/longread_preprocessing.nf 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @LilyAnderssonLee @jfy133
    LilyAnderssonLee and jfy133 committed Jul 12, 2024
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  4. Add nanoq to docs

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 12, 2024
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Commits on Jul 18, 2024

  1. add help text to longread_filter_tool

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 18, 2024
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  2. default of longread_filter_tool into nanoq in nextflow.config

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 18, 2024
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  3. Update nextflow_schema.json

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 18, 2024
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Commits on Jul 26, 2024

  1. Merge branch 'bouncy-basenji' into nanoq

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 26, 2024
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  2. remove nanoq from multiqc_config.yml

    @LilyAnderssonLee
    LilyAnderssonLee committed Jul 26, 2024
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