Code

Add promoter prediction#12

Code

Merged

LeonHafner merged 16 commits intodevnf-core/tfactivity:devfrom promotersnf-core/tfactivity:promotersCopy head branch name to clipboardJun 27, 2024

+1,066-821

Commits

Commits on Jun 1, 2024

• Added promoters to ChromHMM workflow

  LeonHafner

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  130a607

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Commits on Jun 10, 2024

• Added nf-core bedtools slop/complement/intersect

  LeonHafner

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  2226174

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• Added nf-core/gnu_sort

  LeonHafner

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  30f60fe

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Commits on Jun 11, 2024

• Replaced ROSE with bedtools workflow

  LeonHafner

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  3db7bd5

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• Removed ucsc/gtftogenepred

  LeonHafner

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  eb5609d

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Commits on Jun 13, 2024

• Add branch operator

  LeonHafner

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  8b514e1

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Commits on Jun 20, 2024

• Adapt ChromHMM to reformatted bam header

  LeonHafner

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  4ada99a

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• Remove chromm reheadering remnants

  LeonHafner

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  37ceb78

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Commits on Jun 21, 2024

• Forwarded ch_peaks to fimo

  LeonHafner

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  f8a4cbe

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• downstream fimo changes for ch_peaks

  LeonHafner

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  6bd512a

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• switch quotes for code consistency

  LeonHafner

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  dce373d

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• removed unused imports

  LeonHafner

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  8af1963

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Commits on Jun 24, 2024

• added rose parameters

  LeonHafner

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  ac78eb8

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• renamed candidate_regions

  LeonHafner

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  5ea02e0

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Commits on Jun 26, 2024

• Resolve merge conflict

  LeonHafner

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  247590f

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• fix prettier

  LeonHafner

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  d22124c

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