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trying to fix links II
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FranBonath committed Mar 20, 2024
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Expand Up @@ -303,10 +303,10 @@ In the directory `exercise_6` you will find the custom script `print_hello.py`,
:::
<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/add_nf_core_module/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/add_nf_core_module/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to Chapter 4
</a>
<a href="/docs/contributing/nf_core_basic_course/nf_schema/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/nf_schema/" class="btn btn-lg btn-success" style="font-size: 14px">
go to Chapter 6 >
</a>
</p>
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Expand Up @@ -454,10 +454,10 @@ comparison to simple nextflow pipeline from the basic Nextflow training would be
:::
<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/template_walk_through/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/template_walk_through/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to Chapter 3
</a>
<a href="/docs/contributing/nf_core_basic_course/add_custom_module/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/add_custom_module/" class="btn btn-lg btn-success" style="font-size: 14px">
go to Chapter 5 >
</a>
</p>
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Expand Up @@ -69,10 +69,10 @@ To save any file locally from the explorer panel, right-click the file and selec

</details>
<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to training index
</a>
<a href="/docs/contributing/nf_core_basic_course/nf_core_create_tool/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/nf_core_create_tool/" class="btn btn-lg btn-success" style="font-size: 14px">
go to Chapter 2 >
</a>
</p>
14 changes: 7 additions & 7 deletions src/content/docs/contributing/nf_core_basic_training/index.md
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Expand Up @@ -35,15 +35,15 @@ This training can be followed either based on this documentation alone, or via a
## Training sessions

<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/gitpod_environment/" class="btn btn-lg btn-success" target="_blank">
<a href="/docs/contributing/nf_core_basic_training/gitpod_environment/" class="btn btn-lg btn-success" target="_blank">
Chapter 1 - setup the GitPod environment
</a>
</p>

The course is using gitpod in order to avoid the time expense for downloading and installing tools and data.

<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/nf_core_create_tool/" class="btn btn-lg btn-success" target="_blank">
<a href="/docs/contributing/nf_core_basic_training/nf_core_create_tool/" class="btn btn-lg btn-success" target="_blank">
Chapter 2 - Creating a new nf-core pipeline from the nf-core template
</a>
</p>
Expand All @@ -59,30 +59,30 @@ c) Running the pipeline using the test profile
d) Linting the pipeline

<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/nf_core_create_tool/" class="btn btn-lg btn-success">
<a href="/docs/contributing/nf_core_basic_training/nf_core_create_tool/" class="btn btn-lg btn-success">
Chapter 3 - Exploring the nf-core template files
</a>
</p>

The template contains a range of important files and directories. This chapter is giving explanations to all the template content important to beginners.

<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/add_nf_core_module/" class="btn btn-lg btn-success">
<a href="/docs/contributing/nf_core_basic_training/add_nf_core_module/" class="btn btn-lg btn-success">
Chapter 4 - Adding a nf-core module to your pipeline
</a>
</p>
<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/add_custom_module/" class="btn btn-lg btn-success">
<a href="/docs/contributing/nf_core_basic_training/add_custom_module/" class="btn btn-lg btn-success">
Chapter 5 - Adding a local custom module to your pipeline
</a>
</p>
<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/nf_schema/" class="btn btn-lg btn-success">
<a href="/docs/contributing/nf_core_basic_training/nf_schema/" class="btn btn-lg btn-success">
Chapter 6 - Working with Nextflow schema
</a>
</p>
<p class="text-left">
<a href="/docs/contributing/nf_core_basic_course/linting_modules/" class="btn btn-lg btn-success">
<a href="/docs/contributing/nf_core_basic_training/linting_modules/" class="btn btn-lg btn-success">
Chapter 7 - Linting your modules
</a>
</p>
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Expand Up @@ -14,10 +14,10 @@ nf-core modules lint --all
```

<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/nf_schema/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to Chapter 6
</a>
<a href="/docs/contributing/nf_core_basic_course/index/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/index/" class="btn btn-lg btn-success" style="font-size: 14px">
go to training index >
</a>
</p>
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Expand Up @@ -359,10 +359,10 @@ nf-core lint
:::

<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/gitpod_environment/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/gitpod_environment/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to Chapter 1
</a>
<a href="/docs/contributing/nf_core_basic_course/template_walk_through/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/template_walk_through/" class="btn btn-lg btn-success" style="font-size: 14px">
go to Chapter 3 >
</a>
</p>
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Expand Up @@ -64,10 +64,10 @@ Here in the schema editor you can edit:
:::

<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/add_custom_module/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/add_custom_module/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to Chapter 5
</a>
<a href="/docs/contributing/nf_core_basic_course/linting_modules/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/linting_modules/" class="btn btn-lg btn-success" style="font-size: 14px">
go to Chapter 7 >
</a>
</p>
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Expand Up @@ -198,10 +198,10 @@ This file keeps track of modules installed using nf-core tools from the nf-core/
:::

<p class="text-center">
<a href="/docs/contributing/nf_core_basic_course/nf_core_create_tool/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/nf_core_create_tool/" class="btn btn-lg btn-success" style="font-size: 14px">
< go to Chapter 2
</a>
<a href="/docs/contributing/nf_core_basic_course/add_nf_core_module/" class="btn btn-lg btn-success" style="font-size: 14px">
<a href="/docs/contributing/nf_core_basic_training/add_nf_core_module/" class="btn btn-lg btn-success" style="font-size: 14px">
go to Chapter 4 >
</a>
</p>

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