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[automated] Update json files and markdown cache
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@nf-core-bot
nf-core-bot committed Sep 27, 2024
1 parent 2e6c800 commit 953d9d4
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Showing 3 changed files with 58 additions and 49 deletions.
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43 changes: 31 additions & 12 deletions public/components.json
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Original file line number Diff line number Diff line change
Expand Up @@ -7604,6 +7604,10 @@
"name": "rnafusion",
"version": "3.0.2"
},
{
"name": "rnafusion",
"version": "3.0.2"
},
{
"name": "rnafusion",
"version": "3.0.2"
Expand Down Expand Up @@ -13441,13 +13445,14 @@
{
"meta": {
"type": "map",
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n",
"pattern": "*.{vcf.gz}"
}
},
{
"*.gz": {
"type": "file",
"description": "VCF concatenated output file",
"${prefix}.vcf.gz": {
"type": "map",
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n",
"pattern": "*.{vcf.gz}"
}
}
Expand All @@ -13458,13 +13463,14 @@
{
"meta": {
"type": "map",
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n",
"pattern": "*.tbi"
}
},
{
"*.tbi": {
"type": "file",
"description": "Alternative VCF file index",
"${prefix}.vcf.gz.tbi": {
"type": "map",
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n",
"pattern": "*.tbi"
}
}
Expand All @@ -13475,13 +13481,14 @@
{
"meta": {
"type": "map",
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n",
"pattern": "*.csi"
}
},
{
"*.csi": {
"type": "file",
"description": "Default VCF file index",
"${prefix}.vcf.gz.csi": {
"type": "map",
"description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n",
"pattern": "*.csi"
}
}
Expand Down Expand Up @@ -24708,6 +24715,14 @@
"name": "genomeassembler",
"version": "dev"
},
{
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"version": "dev"
},
{
"name": "genomeassembler",
"version": "dev"
},
{
"name": "pathogensurveillance",
"version": "dev"
Expand Down Expand Up @@ -106133,6 +106148,10 @@
"name": "genomeassembler",
"version": "dev"
},
{
"name": "genomeassembler",
"version": "dev"
},
{
"name": "genomeassembler",
"version": "dev"
Expand Down
64 changes: 27 additions & 37 deletions public/pipelines.json
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@
"has_wiki": false,
"has_pages": false,
"has_discussions": false,
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"open_issues_count": 22,
Expand All @@ -38,7 +38,7 @@
"repseq"
],
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"watchers": 52,
"default_branch": "master",
Expand Down Expand Up @@ -72,7 +72,7 @@
"status": "disabled"
}
},
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"subscribers_count": 144,
"team_contributors_permission_push": true,
"team_contributors_permission_admin": false,
Expand Down Expand Up @@ -534,7 +534,7 @@
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Expand All @@ -557,7 +557,7 @@
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Expand Down Expand Up @@ -3703,23 +3703,13 @@
"url": "https://api.github.com/repos/nf-core/chipseq/branches/master/protection/required_status_checks",
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},
{
"context": "Prettier",
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},
{
"context": "EditorConfig",
"app_id": 15368
}
]
},
Expand Down Expand Up @@ -10630,12 +10620,12 @@
"fork": false,
"url": "https://api.github.com/repos/nf-core/eager",
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Expand All @@ -10662,7 +10652,7 @@
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"allow_squash_merge": false,
Expand Down Expand Up @@ -12078,12 +12068,12 @@
"fork": false,
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Expand All @@ -12110,7 +12100,7 @@
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Expand Down Expand Up @@ -15810,12 +15800,12 @@
"fork": false,
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Expand All @@ -15840,7 +15830,7 @@
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Expand Down Expand Up @@ -23105,9 +23095,9 @@
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Expand All @@ -23120,7 +23110,7 @@
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Expand All @@ -23134,7 +23124,7 @@
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Expand Down Expand Up @@ -23232,7 +23222,7 @@
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Expand Down Expand Up @@ -24006,7 +23996,7 @@
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Expand Down Expand Up @@ -39247,7 +39237,7 @@
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Expand All @@ -39257,7 +39247,7 @@
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Expand Down Expand Up @@ -39345,7 +39335,7 @@
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{
Expand Down

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