[automated] Update json files and markdown cache

nf-core · Dec 17, 2024 · e7c84f2 · e7c84f2
1 parent 797d361
commit e7c84f2
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Showing 3 changed files with 61 additions and 17 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -8445,6 +8445,10 @@
           "name": "rnafusion",
           "version": "3.0.2"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.2"
@@ -27401,6 +27405,14 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "pathogensurveillance",
           "version": "dev"
@@ -107088,6 +107100,22 @@
           "name": "pathogensurveillance",
           "version": "dev"
         },
+        {
+          "name": "phyloplace",
+          "version": "1.0.0"
+        },
+        {
+          "name": "ampliseq",
+          "version": "2.12.0"
+        },
+        {
+          "name": "multiplesequencealign",
+          "version": "1.0.0"
+        },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
         {
           "name": "phyloplace",
           "version": "1.0.0"
@@ -113282,6 +113310,10 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -132162,6 +132194,10 @@
           "name": "viralrecon",
           "version": "2.6.0"
         },
+        {
+          "name": "viralrecon",
+          "version": "2.6.0"
+        },
         {
           "name": "viralrecon",
           "version": "2.6.0"
@@ -206145,6 +206181,10 @@
           "name": "phageannotator",
           "version": "dev"
         },
+        {
+          "name": "phageannotator",
+          "version": "dev"
+        },
         {
           "name": "phageannotator",
           "version": "dev"
@@ -209719,6 +209759,10 @@
           "name": "riboseq",
           "version": "1.0.1"
         },
+        {
+          "name": "riboseq",
+          "version": "1.0.1"
+        },
         {
           "name": "riboseq",
           "version": "1.0.1"

diff --git a/public/pipelines.json b/public/pipelines.json
@@ -5218,7 +5218,7 @@
             "url": "https://api.github.com/repos/nf-core/coproid",
             "created_at": "2019-04-23T15:38:41Z",
             "updated_at": "2024-09-03T10:14:56Z",
-            "pushed_at": "2024-12-12T13:46:55Z",
+            "pushed_at": "2024-12-17T13:12:57Z",
             "homepage": "https://nf-co.re/coproid",
             "size": 116005,
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@@ -8494,9 +8494,9 @@
             "url": "https://api.github.com/repos/nf-core/demo",
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             "updated_at": "2024-10-21T11:41:32Z",
-            "pushed_at": "2024-12-17T11:39:20Z",
+            "pushed_at": "2024-12-17T13:56:01Z",
             "homepage": "https://nf-co.re/demo",
-            "size": 687,
+            "size": 709,
             "stargazers_count": 3,
             "watchers_count": 3,
             "language": "Nextflow",
@@ -10712,7 +10712,7 @@
             "updated_at": "2024-12-05T19:05:56Z",
             "pushed_at": "2024-12-17T12:19:11Z",
             "homepage": "https://nf-co.re/differentialabundance",
-            "size": 9145,
+            "size": 9150,
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             "watchers_count": 66,
             "language": "Nextflow",
@@ -18829,7 +18829,7 @@
             "updated_at": "2024-12-16T17:01:37Z",
             "pushed_at": "2024-12-17T12:11:28Z",
             "homepage": "https://nf-co.re/mag",
-            "size": 24933,
+            "size": 26294,
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             "watchers_count": 219,
             "language": "Nextflow",
@@ -26544,7 +26544,7 @@
                 }
             },
             "network_count": 2,
-            "subscribers_count": 181,
+            "subscribers_count": 180,
             "team_contributors_permission_push": true,
             "team_contributors_permission_admin": false,
             "team_core_permission_push": true,
@@ -26745,7 +26745,7 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/pangenome",
             "created_at": "2020-11-08T18:02:43Z",
-            "updated_at": "2024-11-18T03:16:39Z",
+            "updated_at": "2024-12-17T13:38:58Z",
             "pushed_at": "2024-12-12T11:25:33Z",
             "homepage": "https://nf-co.re/pangenome",
             "size": 4444,
@@ -31895,9 +31895,9 @@
             "url": "https://api.github.com/repos/nf-core/reportho",
             "created_at": "2024-02-26T10:23:32Z",
             "updated_at": "2024-10-21T17:45:17Z",
-            "pushed_at": "2024-12-17T12:20:58Z",
+            "pushed_at": "2024-12-17T13:37:14Z",
             "homepage": "",
-            "size": 2025,
+            "size": 2050,
             "stargazers_count": 9,
             "watchers_count": 9,
             "language": "Nextflow",
@@ -32122,7 +32122,7 @@
             "url": "https://api.github.com/repos/nf-core/riboseq",
             "created_at": "2023-10-18T00:45:36Z",
             "updated_at": "2024-11-19T10:32:03Z",
-            "pushed_at": "2024-12-17T10:13:39Z",
+            "pushed_at": "2024-12-17T13:23:25Z",
             "homepage": "https://nf-co.re/riboseq",
             "size": 20684,
             "stargazers_count": 11,
@@ -32769,7 +32769,7 @@
             "url": "https://api.github.com/repos/nf-core/rnafusion",
             "created_at": "2018-10-05T13:05:57Z",
             "updated_at": "2024-12-17T08:45:02Z",
-            "pushed_at": "2024-12-12T11:24:27Z",
+            "pushed_at": "2024-12-17T13:48:34Z",
             "homepage": "https://nf-co.re/rnafusion",
             "size": 19886,
             "stargazers_count": 147,
@@ -32784,7 +32784,7 @@
             "forks_count": 98,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 48,
+            "open_issues_count": 49,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -32797,7 +32797,7 @@
             ],
             "visibility": "public",
             "forks": 98,
-            "open_issues": 48,
+            "open_issues": 49,
             "watchers": 147,
             "default_branch": "master",
             "temp_clone_token": "",
@@ -32885,7 +32885,7 @@
             "TEMPLATE_branch_protection_enforce_admins": -1,
             "TEMPLATE_restrict_push": true,
             "has_required_topics": true,
-            "open_pr_count": 7,
+            "open_pr_count": 8,
             "repository_url": "https://github.com/nf-core/rnafusion",
             "contributors": [
                 {
@@ -36873,7 +36873,7 @@
             "forks_count": 417,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 298,
+            "open_issues_count": 299,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -36892,7 +36892,7 @@
             ],
             "visibility": "public",
             "forks": 417,
-            "open_issues": 298,
+            "open_issues": 299,
             "watchers": 412,
             "default_branch": "master",
             "temp_clone_token": "",
@@ -43869,7 +43869,7 @@
             "updated_at": "2024-12-14T13:31:55Z",
             "pushed_at": "2024-12-17T12:02:18Z",
             "homepage": "https://nf-co.re/taxprofiler",
-            "size": 16474,
+            "size": 16481,
             "stargazers_count": 132,
             "watchers_count": 132,
             "language": "Nextflow",