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Merge pull request #2901 from nf-core/doc-offline-no-all-warning
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Offline docs: remove warning about `-all`
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mashehu authored Jan 13, 2025
2 parents 2bc1c70 + f406af9 commit fb537d2
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Expand Up @@ -22,9 +22,6 @@ First of all, you need to have Nextflow installed on your system.
We do this by installing it locally on a machine that _does_ have an internet connection, and then transferring to the offline system.

- Start by [installing Nextflow locally](https://nextflow.io/docs/latest/getstarted.html#installation).
:::warning
do _not_ use the `-all` package, as this does not allow the use of custom plugins.
:::
- Kick off a pipeline locally so that Nextflow fetches the required plugins. It does not need to run to completion.
- Copy the Nextflow binary and `$HOME/.nextflow` folder to your offline environment.
- In your Nextflow configuration file, specify each plugin that you downloaded, both name and version, including default plugins. This will prevent Nextflow from trying to download newer versions of plugins.
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