Fix for new props

nf-osi · Jun 30, 2023 · 4dff155 · 4dff155
1 parent 5dfa211
commit 4dff155
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Showing 2 changed files with 22 additions and 6 deletions.
diff --git a/modules/Template/Template.yaml b/modules/Template/Template.yaml
@@ -534,6 +534,7 @@ classes:
     - Component
     - Filename
     - resourceType
+    - title
     - author
     - citation
     - license
@@ -576,6 +577,7 @@ DatasetTemplate:
   - title
   - creator
   - contributor
+  - currentVersion
   - description
   - license
   - dataType
@@ -588,8 +590,8 @@ DatasetTemplate:
   - publisher
   - yearProcessed
   - yearPublished
-  - fileCount
-  - fileSize
+  - datasetItemCount
+  - datasetSizeInBytes
 
 #######################################
 # PartialTemplate              

diff --git a/modules/props.yaml b/modules/props.yaml
@@ -164,11 +164,13 @@ slots:
   contributor:
     description: An entity responsible for making contributions to the resource.
     meaning: https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#contributor
+    required: false
   creator:
     description: An entity responsible for making the resource.
     notes:
     - Recommended practice is to identify the creator with a URI. If this is not possible or feasible, a literal value that identifies the creator may be provided.
     meaning: https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#creator
+    required: true
   createdBy:
     description: Refers to the user who created the resource.
     in_subset:
@@ -185,6 +187,7 @@ slots:
     required: false
   currentVersion:
     description: (Versionable entities only) The current version number of the resource.
+    meaning: https://www.w3.org/TR/vocab-dcat-3/#Property:resource_version
     in_subset:
       - Synapse
     notes:
@@ -212,6 +215,16 @@ slots:
     description: |
       A type of data -- experimental, clinical, or other. Most typically refers to a high-level data type that can be related to an assay type.  For example, a file of dataType `genomicVariants` might have an assay value of `whole genome sequencing`.
     required: false
+  datasetSizeInBytes:
+    description: Size of dataset entity in bytes. Auto-calculated by Synapse.
+    in_subset:
+      - Synapse
+    required: false
+  datasetItemCount:
+    description: Count of files in dataset. Auto-calculated by Synapse.
+    in_subset:
+      - Synapse
+    required: false
   description:
     description: Text describing a resource.
     required: false
@@ -291,9 +304,7 @@ slots:
       - Synapse
     required: false
   fileSize:
-    description: Size of total file(s) in bytes.
-    notes:
-    - This is auto-generated by Synapse for datasets.
+    description: Size of file in bytes.
     in_subset:
       - Synapse
     required: false
@@ -566,12 +577,15 @@ slots:
   protocolAssay:
     description: >
       Main assay type that this protocol is related to, e.g. this is a prep protocol for single-cell RNA-seq assay. This is especially helpful for newly-developed or in-house assays.
-    range: Assay
+    range: AssayEnum
+    required: false
   protocolPurpose:
     description: Brief description of the protocol purpose.
+    required: false
   publisher:
     description: An entity responsible for making the resource available.
     meaning: https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#http://purl.org/dc/terms/publisher
+    required: false
   readDepth:
     description: If available, the coverage statistic as output from bedtools coverage or samtools stats.
     notes: