Update pkgdown and docs

nf-osi · Aug 25, 2023 · bc9ddd6 · bc9ddd6
1 parent 97e316b
commit bc9ddd6
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Showing 7 changed files with 87 additions and 0 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -38,6 +38,8 @@ export(convert_to_stringlist)
 export(copy_annotations)
 export(data_curator_app_subpage)
 export(delete_provenance)
+export(find_child)
+export(find_in)
 export(from_pubmed)
 export(get_by_prop_from_json_schema)
 export(get_dependency_from_json_schema)
@@ -57,8 +59,10 @@ export(missing_annotation_email)
 export(new_dataset)
 export(new_project)
 export(nf_cnv_dataset)
+export(nf_find_asset)
 export(nf_sarek_datasets)
 export(nf_star_salmon_datasets)
+export(nf_workflow_version)
 export(processing_flowchart)
 export(qc_manifest)
 export(register_study)

diff --git a/R/find.R b/R/find.R
@@ -75,6 +75,7 @@ nf_find_asset <- function(syn_out,
 
 #' Return workflow version according to workflow meta
 #' 
+#' @inheritParams nf_find_asset
 #' @returns Version string. 
 #' @export
 nf_workflow_version <- function(syn_out) {

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -44,6 +44,7 @@ reference:
   - annotate_cnv
   - annotate_reports_sarek
   - annotate_with_tool_stats
+  - nf_workflow_version
 
 - title: Dataset Creation and Management
 - subtitle: General dataset creation and citation
@@ -80,6 +81,12 @@ reference:
   - summarize_file_access
   - grant_specific_file_access
 
+- title: Search Utils
+  desc: Help locate Synapse accessions, etc.
+- contents: 
+  - contains("find")
+  - nf_find_asset
+
 - title: Provenance Utils
   desc: Manage provenance metadata
 - contents:

diff --git a/man/find_child.Rd b/man/find_child.Rd
diff --git a/man/find_in.Rd b/man/find_in.Rd
diff --git a/man/nf_find_asset.Rd b/man/nf_find_asset.Rd
diff --git a/man/nf_workflow_version.Rd b/man/nf_workflow_version.Rd