Skip to content
@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

Pinned Loading

  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 666 300

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 67 25

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 139 40

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 316 134

Repositories

Showing 10 of 54 repositories
  • nireports Public

    The NiPreps' Reporting and Visualization system - report templates and "reportlets"

    nipreps/nireports’s past year of commit activity
    Python 10 Apache-2.0 19 16 (1 issue needs help) 8 Updated Apr 28, 2025
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 96 Apache-2.0 53 64 (4 issues need help) 5 Updated Apr 28, 2025
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 666 Apache-2.0 300 310 (24 issues need help) 13 Updated Apr 28, 2025
  • fmripost-template Public template

    A generic fMRIPost workflow

    nipreps/fmripost-template’s past year of commit activity
    Python 0 Apache-2.0 1 5 1 Updated Apr 23, 2025
  • fmripost-aroma Public

    Run ICA-AROMA on fMRIPrep derivatives

    nipreps/fmripost-aroma’s past year of commit activity
    Python 11 Apache-2.0 2 19 2 Updated Apr 22, 2025
  • fmriprep_stats Public

    Automatic reports summarizing usage stats from Sentry.io

    nipreps/fmriprep_stats’s past year of commit activity
    Jupyter Notebook 4 1 0 1 Updated Apr 21, 2025
  • .github Public

    Shared community health files

    nipreps/.github’s past year of commit activity
    2 CC0-1.0 2 0 0 Updated Apr 16, 2025
  • mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    nipreps/mriqc’s past year of commit activity
    Python 316 Apache-2.0 134 68 (10 issues need help) 3 Updated Apr 15, 2025
  • nibabies Public

    fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI

    nipreps/nibabies’s past year of commit activity
    Python 30 Apache-2.0 12 37 2 Updated Apr 10, 2025
  • fmripost-rapidtide Public

    A BIDS App for running rapidtide on a preprocessed fMRI dataset.

    nipreps/fmripost-rapidtide’s past year of commit activity
    Python 2 Apache-2.0 1 12 1 Updated Apr 6, 2025

Top languages

Loading…

Most used topics

Loading…