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  1. stellarscope stellarscope Public

    Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing

    Python 9 2

  2. bioinformatics_tips bioinformatics_tips Public

    General bioinformatics tips

    2

  3. snakemake_references snakemake_references Public

    Python 1

  4. scTelescope scTelescope Public

    Quantify HERVs in single-cell sequencing data

    Python 1

  5. scopetools scopetools Public

    Utility functions for working with Telescope and Stellarscope data

    R 1

  6. wcm_scu wcm_scu Public

    Notes about working with WCM SCU Resources

    Shell

Repositories

Showing 10 of 31 repositories
  • HERV_GCB_Bulk Public

    Analysis of bulk RNA-Seq data from the Germinal Center.

    nixonlab/HERV_GCB_Bulk’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 21, 2025
  • follicular_lymphoma_TE_atlas Public
    nixonlab/follicular_lymphoma_TE_atlas’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 21, 2025
  • burkitt_lymphoma_TE_atlas Public

    TE quantification (Telescope) pipeline for Burkitt Lymphoma bulk RNA-seq samples

    nixonlab/burkitt_lymphoma_TE_atlas’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 21, 2025
  • DLBCL_HERV_atlas_GDC Public
    nixonlab/DLBCL_HERV_atlas_GDC’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 21, 2025
  • stellarscope Public

    Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing

    nixonlab/stellarscope’s past year of commit activity
    Python 9 MIT 2 11 0 Updated Mar 14, 2025
  • HOPE_informatics_core Public
    nixonlab/HOPE_informatics_core’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 20, 2024
  • snakemake_references Public
    nixonlab/snakemake_references’s past year of commit activity
    Python 1 0 0 0 Updated Jul 31, 2024
  • HERV_scGTEX Public

    Quantify HERVs in single nucleus RNA-seq GTEx datasets using single-cell Telescope (scTelescope)

    nixonlab/HERV_scGTEX’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Dec 27, 2023
  • HERV_scGCB Public

    Single cell data from Germinal Center B cell paper

    nixonlab/HERV_scGCB’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 11, 2023
  • TCGA_SKCM_mets Public

    The Repository to download, STAR_align, TELESCOPE and Process DE for Mets vs. Non-mets TCGA CM Bulk-RNAseq

    nixonlab/TCGA_SKCM_mets’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 24, 2023
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