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The overarching vision of NMFS Open Science is to support scientists, developers, resource managers and policy analysts within NOAA Fisheries (NMFS) in fulfilling NOAA’s Open Science mandates: NOAA Data Strategy, DOC Open Source Code Policy, and the Federal Open Access Memo. Delivering on this ambitious vision requires actively supporting staff in transforming to reproducible workflows and work products that will employ timely, transparent, and accessible data-driven science and decision-making. Such transformation calls for both increased collaboration across offices and regions towards shared scientific data science tasks and expanded support of open science, open data, and open source communities and initiatives within NOAA Fisheries. Cultural change requires time and new skills. NMFS Open Science works to support staff with empathy, kindness and inclusion to authentically address the barriers NMFS staff face in adopting Open Data and Open Science.

  • Support Open Science and Open Data literacy across NOAA Fisheries
  • Identify staff training needs and facilitate access to this training (via our partners, advertising events, and organizing trainings)
  • Support and amplify NMFS Open Science user groups and communities
  • Facilitate collaboration and exchange on open science tools and products
  • Identify technical and administrative barriers that staff face in transitioning to open science and take a leadership role in finding and implementing solutions

NMFS Open Science lead: Eli Holmes, PhD. NOAA Fisheries, https://www.fisheries.noaa.gov/science-data/open-science-noaa-fisheries

NMFS Open Sci Resources: VisionResource BookNMFS GitHub GuideGitHub repo templatesNMFS GitHub orgsNMFS Open Science (NOAA internal)NMFS GitHub Governance Team (NOAA internal)

Open Science at NOAA Fisheries

NMFS Openscapes NOAA Fisheries Integrated Toolbox NOAA Fisheries Integrated Modeling System NMFS R User Group
NOAA Fisheries is partnering with Openscapes to provide team-based training in reproducible workflows. Openscapes’ training helps teams transition to robust, inclusive, and enduring science- and data-driven solutions to global and time-sensitive challenges. The NOAA Fisheries Integrated Toolbox (NOAA FIT) is an interdisciplinary, web-based portal of operational tools that can be used for a variety of applications, including stock assessment modeling, forecasting, and data preparation for fish and protected species, as well as economic and ecosystem modeling. The NOAA Fisheries Integrated Modeling System is a software system designed and architected to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling. Users and developers are welcome to submit feedback using Github issues. The NMFS R User Group supports R users across NOAA Fisheries. We host monthly meetings on topics of interest and we have an active Google Space for questions and event announcements.

Contact NMFS OpenSci admins

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  1. NMFS-R-UG NMFS-R-UG Public

    NMFS R UG website

    HTML 2

  2. GitHub-Guide GitHub-Guide Public template

    GitHub Guide developed by NMFS Open Science

    Lua 4 3

  3. ResourceBook ResourceBook Public template

    On online resource book from the NMFS Open Science community

    JavaScript 2 4

  4. Contributor-Guide Contributor-Guide Public template

    NMFS Open Sci Contributor Guide

    Lua 1

Repositories

Showing 10 of 57 repositories
  • container-images Public template

    The docker stack for data science applications for NOAA Fisheries

    nmfs-opensci/container-images’s past year of commit activity
    Dockerfile 8 Apache-2.0 2 16 1 Updated Nov 5, 2024
  • py-rocket-base Public

    base jupyterhub image with Python and R. See packages for the images.

    nmfs-opensci/py-rocket-base’s past year of commit activity
    Shell 2 BSD-3-Clause 0 14 (1 issue needs help) 0 Updated Nov 5, 2024
  • GitHub-Guide Public template

    GitHub Guide developed by NMFS Open Science

    nmfs-opensci/GitHub-Guide’s past year of commit activity
    Lua 4 3 4 0 Updated Nov 4, 2024
  • ResourceBook Public template

    On online resource book from the NMFS Open Science community

    nmfs-opensci/ResourceBook’s past year of commit activity
    JavaScript 2 CC-BY-4.0 4 1 0 Updated Nov 4, 2024
  • QuartoReport Public

    Example government report

    nmfs-opensci/QuartoReport’s past year of commit activity
    R 9 1 8 1 Updated Nov 4, 2024
  • Quarto-Workshop-2024 Public

    NMFS Open Sci Quarto 2024 workshop

    nmfs-opensci/Quarto-Workshop-2024’s past year of commit activity
    Lua 2 MIT 1 0 0 Updated Nov 4, 2024
  • NMFS-R-UG Public

    NMFS R UG website

    nmfs-opensci/NMFS-R-UG’s past year of commit activity
    HTML 2 CC0-1.0 0 0 0 Updated Oct 30, 2024
  • hub-image-template Public template

    Template for making images that work on a JupyterHub

    nmfs-opensci/hub-image-template’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Oct 23, 2024
  • NOAAHackDays Public template

    Tutorials and content for Hackdays and Hackhours

    nmfs-opensci/NOAAHackDays’s past year of commit activity
    Jupyter Notebook 1 CC0-1.0 1 2 0 Updated Oct 19, 2024
  • NOAA-quarto-book Public template

    A Quarto book project with html, pdf and Word output types.

    nmfs-opensci/NOAA-quarto-book’s past year of commit activity
    TeX 22 CC0-1.0 5 0 0 Updated Oct 17, 2024

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