Deprecate NMR instrument type and move its children under `obi:NMR …

…instrument`

as two other of the children already existed there in OBI and it is better to have these types as actual material entities and not as info  declaring the type.

src/ontology/nmrCV-edit.owl

@@ -975,10 +975,14 @@ SubClassOf(<http://nmrML.org/nmrCV#NMR:1000010> <http://nmrML.org/nmrCV#NMR:1000
 AnnotationAssertion(rdfs:label <http://nmrML.org/nmrCV#NMR:1000011> "data file attribute"@en)
 SubClassOf(<http://nmrML.org/nmrCV#NMR:1000011> obo:BFO_0000031)
 
-# Class: <http://nmrML.org/nmrCV#NMR:1000012> (NMR instrument type)
+# Class: <http://nmrML.org/nmrCV#NMR:1000012> (obsolete_NMR instrument type)
 
-AnnotationAssertion(rdfs:label <http://nmrML.org/nmrCV#NMR:1000012> "NMR instrument type"@en)
-SubClassOf(<http://nmrML.org/nmrCV#NMR:1000012> <http://nmrML.org/nmrCV#NMR:1000496>)
+AnnotationAssertion(obo:IAO_0000116 <http://nmrML.org/nmrCV#NMR:1000012> "Deprecated as OBI:'NMR instrument' contains all possible subtypes")
+AnnotationAssertion(obo:IAO_0000231 <http://nmrML.org/nmrCV#NMR:1000012> obo:IAO_0000227)
+AnnotationAssertion(obo:IAO_0100001 <http://nmrML.org/nmrCV#NMR:1000012> obo:OBI_0000566)
+AnnotationAssertion(rdfs:label <http://nmrML.org/nmrCV#NMR:1000012> "obsolete_NMR instrument type"@en)
+AnnotationAssertion(owl:deprecated <http://nmrML.org/nmrCV#NMR:1000012> "true"^^xsd:boolean)
+SubClassOf(<http://nmrML.org/nmrCV#NMR:1000012> oboInOwl:ObsoleteClass)
 
 # Class: <http://nmrML.org/nmrCV#NMR:1000013> (1D spectrum coordinate system descriptor)
 
@@ -2124,7 +2128,7 @@ SubClassOf(<http://nmrML.org/nmrCV#NMR:1000221> <http://nmrML.org/nmrCV#NMR:1400
 AnnotationAssertion(oboInOwl:hasExactSynonym <http://nmrML.org/nmrCV#NMR:1000222> "DNP NMR")
 AnnotationAssertion(oboInOwl:hasExactSynonym <http://nmrML.org/nmrCV#NMR:1000222> "dynamic nuclear polarization enhanced NMR system")
 AnnotationAssertion(rdfs:label <http://nmrML.org/nmrCV#NMR:1000222> "dynamic nuclear polarization NMR"@en)
-SubClassOf(<http://nmrML.org/nmrCV#NMR:1000222> <http://nmrML.org/nmrCV#NMR:1000012>)
+SubClassOf(<http://nmrML.org/nmrCV#NMR:1000222> obo:OBI_0000566)
 
 # Class: <http://nmrML.org/nmrCV#NMR:1000223> (chemical shift)
 
@@ -5126,7 +5130,7 @@ SubClassOf(<http://nmrML.org/nmrCV#NMR:1400199> obo:OBI_0000596)
 
 AnnotationAssertion(rdfs:comment <http://nmrML.org/nmrCV#NMR:1400200> "NMR Instruments using hyphenated analytical techniques combining mass spectrometry and chromatograph.")
 AnnotationAssertion(rdfs:label <http://nmrML.org/nmrCV#NMR:1400200> "Hyphenated NMR instrument")
-SubClassOf(<http://nmrML.org/nmrCV#NMR:1400200> <http://nmrML.org/nmrCV#NMR:1000012>)
+SubClassOf(<http://nmrML.org/nmrCV#NMR:1400200> obo:OBI_0000566)
 
 # Class: <http://nmrML.org/nmrCV#NMR:1400201> (Capillary LC-NMR)
 
@@ -5534,7 +5538,7 @@ SubClassOf(<http://nmrML.org/nmrCV#NMR:1400277> <http://nmrML.org/nmrCV#NMR:1400
 AnnotationAssertion(oboInOwl:hasExactSynonym <http://nmrML.org/nmrCV#NMR:1400278> "SPE NMR")
 AnnotationAssertion(rdfs:comment <http://nmrML.org/nmrCV#NMR:1400278> "A Solid Phase Extraction (SPE) system provides an interface between liquid chromatography (LC) and NMR. For the process of LC-SPE™ NMR a chromatographic separation is done and the peaks of interest are trapped on an individual SPE cartridge after the column. The peak selection is done either by UV detection or by evaluation of the on-line registered MS or MSn spectra.")
 AnnotationAssertion(rdfs:label <http://nmrML.org/nmrCV#NMR:1400278> "solid phase extraction NMR")
-SubClassOf(<http://nmrML.org/nmrCV#NMR:1400278> <http://nmrML.org/nmrCV#NMR:1000012>)
+SubClassOf(<http://nmrML.org/nmrCV#NMR:1400278> obo:OBI_0000566)
 
 # Class: <http://nmrML.org/nmrCV#NMR:1400279> (Capillary LC-NMR)