Config for Accelerator Physics conda env

[mrakitin]

cc @yhidaka

[mrakitin]

Here is an example of the output files after rendering:

$ python render.py -c configs/apv2-test.yml -f Dockerfile.j2 -f runner.sh.j2
Dockerfile
runner-apv2-test.sh

$ cat Dockerfile
FROM quay.io/condaforge/linux-anvil-comp7:latest as build

ENV env_name="apv2-test"
ENV python_version=""
ENV pkg_name=""
ENV extra_packages="mamba"
ENV channels="-c conda-forge"
ENV conda_env_file="apv2-test.yml"
ENV conda_binary="mamba"
ENV HOME="/home/conda"

# RUN echo "always_yes: true\n\
# envs_dirs:\n\
#   - ~/conda_envs\n\
#   - /opt/conda_envs" >> /home/conda/.condarc

RUN yum install mesa-libGL -y && yum clean all

COPY export.sh ${HOME}/export.sh

COPY envs/${conda_env_file} ${HOME}/${conda_env_file}

RUN source /opt/conda/etc/profile.d/conda.sh && \
    conda install -y ${channels} conda mamba && \
    mamba env create -p /opt/conda_envs/${env_name} --file=${HOME}/${conda_env_file} conda-pack

$ cat runner-apv2-test.sh
#!/bin/bash

set -vxeuo pipefail

export docker_image="quay.io/condaforge/linux-anvil-comp7:latest"
export env_name="apv2-test"
export conda_env_file="apv2-test.yml"
export conda_binary="mamba"
export python_version=""
export pkg_name=""
export pkg_version=""
export extra_packages="mamba"
export channels="-c conda-forge"
export extra_cmd_before_install="yum install mesa-libGL -y"
export extra_cmd_after_install=""
export docker_upload="['ghcr', 'dockerhub']"
export zenodo_upload="no"
export script_name="runner-apv2-test.sh"

if [ -f "${env_name}.tar.gz" ]; then
    echo -e "File ${env_name}.tar.gz exists. Move it or remove it before proceeding."
    exit 1
fi

export build_dir="/build"
repo_dir="/repo"
artifacts_dir="${PWD}/artifacts"
mkdir -m 0777 -v -p ${artifacts_dir}

timestamp=$(date +%Y%m%d%H%M%S)

docker image build . -t ${env_name}:latest \
                     -t ${env_name}:${timestamp}

daemon_mode="${GITHUB_ACTIONS:-false}"
if [ "${daemon_mode}" == "true" ]; then
    interactive="-d"
else
    interactive="-it"
fi
docker_run_cmd="docker run ${interactive} --rm --name ${env_name} \
                    -v ${artifacts_dir}:${build_dir}:rw,z,delegated \
                    -v ${PWD}:${repo_dir} \
                    -e env_name -e channels -e build_dir \
                    ${env_name}:${timestamp} bash ${repo_dir}/export.sh"
echo -e "docker run command:\n\n${docker_run_cmd}\n"

if [ "${daemon_mode}" == "true" ]; then
    container_id=$(${docker_run_cmd})
    docker logs --follow $container_id
else
    ${docker_run_cmd}
fi

# echo $GITHUB_TOKEN | docker login ghcr.io --username $GITHUB_USERNAME --password-stdin
# docker tag ${env_name}:${timestamp} ghcr.io/$GITHUB_USERNAME/${env_name}:${timestamp}
# docker tag ${env_name}:${timestamp} ghcr.io/$GITHUB_USERNAME/${env_name}:latest
# docker image push ghcr.io/$GITHUB_USERNAME/${env_name}:${timestamp}
# docker image push ghcr.io/$GITHUB_USERNAME/${env_name}:latest


# echo $DOCKER_PASSWORD | docker login --username $DOCKER_USERNAME --password-stdin
# docker tag ${env_name}:${timestamp} $DOCKER_REPO:${timestamp}
# docker tag ${env_name}:${timestamp} $DOCKER_REPO:latest
# docker push $DOCKER_REPO:${timestamp}
# docker push $DOCKER_REPO:latest