Update env files #172
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| name: package_env | |
| on: | |
| push: | |
| # pull_request: | |
| jobs: | |
| generate_conda_packd_envs: | |
| name: conda-pack'd env with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| fail-fast: false | |
| env: | |
| TZ: America/New_York | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Set env vars | |
| run: | | |
| export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/} # just the repo, as opposed to org/repo | |
| echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV | |
| export DATETIME_STRING=$(date +%Y%m%d%H%M%S) | |
| echo "DATETIME_STRING=${DATETIME_STRING}" >> $GITHUB_ENV | |
| - name: Set non-secret environment variables | |
| run: | | |
| export PYTHONVER=$(echo ${{ matrix.python-version }} | sed 's/\.//g') | |
| echo "PYTHONVER=${PYTHONVER}" >> $GITHUB_ENV | |
| export CONDA_PACK_TEMPLATE_DIR=${HOME}/conda-pack-template | |
| echo "CONDA_PACK_TEMPLATE_DIR=${CONDA_PACK_TEMPLATE_DIR}" >> $GITHUB_ENV | |
| - name: checkout the code | |
| uses: actions/checkout@v3 | |
| - name: checkout NSLS-II/conda-pack-template | |
| run: | | |
| git clone https://github.com/NSLS-II/conda-pack-template ${CONDA_PACK_TEMPLATE_DIR} | |
| cd ${CONDA_PACK_TEMPLATE_DIR} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: ${{ env.REPOSITORY_NAME }} | |
| auto-update-conda: true | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| - name: pip-install dependencies | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| python3 -m pip install -r ${CONDA_PACK_TEMPLATE_DIR}/requirements.txt | |
| python3 -m pip install shyaml | |
| - name: pip-install dev-dependencies | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| python3 -m pip install -r ${CONDA_PACK_TEMPLATE_DIR}/requirements-dev.txt | |
| - name: check env | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| conda info | |
| conda env list | |
| conda list | |
| pip list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: render config | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeo pipefail | |
| env_name=$(cat configs/config-py${PYTHONVER}.yml | shyaml get-value env_name) | |
| export CONDA_PACK_ENV_NAME="${env_name}" | |
| echo "CONDA_PACK_ENV_NAME=${CONDA_PACK_ENV_NAME}" >> $GITHUB_ENV | |
| dockerfile=$(python3 ${CONDA_PACK_TEMPLATE_DIR}/render.py -c configs/config-py${PYTHONVER}.yml -f Dockerfile.j2) | |
| runner=$(python3 ${CONDA_PACK_TEMPLATE_DIR}/render.py -c configs/config-py${PYTHONVER}.yml -f runner.sh.j2) | |
| echo "${dockerfile}" | |
| echo "${runner}" | |
| ls -la | |
| cat "${dockerfile}" | |
| cat "${runner}" | |
| export CONDA_PACK_TEMPLATE_RUNNER="${runner}" | |
| echo "CONDA_PACK_TEMPLATE_RUNNER=${CONDA_PACK_TEMPLATE_RUNNER}" >> $GITHUB_ENV | |
| - name: run a build with Docker/Podman | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeo pipefail | |
| cp -v ${CONDA_PACK_TEMPLATE_DIR}/export.sh . | |
| bash ${CONDA_PACK_TEMPLATE_RUNNER} | |
| ls -laF | |
| cp -v Dockerfile ${CONDA_PACK_TEMPLATE_RUNNER} artifacts/ | |
| sudo chown -v $USER: artifacts/* | |
| ls -laF artifacts/ | |
| - name: contents of the env .yml file | |
| run: | | |
| cat artifacts/${CONDA_PACK_ENV_NAME}.yml | |
| - name: checksum files | |
| run: | | |
| cat artifacts/*sum.txt | |
| # https://github.com/actions/upload-artifact | |
| - name: upload artifacts for branch | |
| if: | | |
| github.ref != 'refs/heads/main' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-${{ env.CONDA_PACK_ENV_NAME }}-${{ env.DATETIME_STRING }} | |
| path: artifacts | |
| retention-days: 14 | |
| - name: upload artifacts for release | |
| if: | | |
| github.ref == 'refs/heads/main' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.CONDA_PACK_ENV_NAME }} | |
| path: artifacts | |
| retention-days: 60 | |
| - name: upload artifacts for the env .yml file | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.CONDA_PACK_ENV_NAME }}.yml | |
| path: artifacts/${{ env.CONDA_PACK_ENV_NAME}}.yml | |
| retention-days: 60 |