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Fix another cornercase with symlink handling
* Symlinks to a directory inside of /etc/pki were being created as empty directories. * Note: unittests being added for both this problem and a second problem: two links to the same external file will be copied as two separate files but ideally we want one to be a copy and the other to link to the copy. The unittests for the second problem are commented out. Fixes: https://issues.redhat.com/browse/RHEL-3284
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