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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,45 +1,5 @@ | ||
| # B004: Cys147 CA - Cys204 CA | ||
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| ## Probability density function | ||
|
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| <figure markdown> | ||
| {width=600} | ||
| </figure> | ||
|
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| ### Quantitative | ||
|
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| --8<-- "study/figures/b-cys/b004-cys147_ca-cys204_ca/pdf-info.md" | ||
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| ## Potential of mean force | ||
| # Fig001 | ||
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| <figure markdown> | ||
| {width=600} | ||
| {width=600} | ||
| </figure> | ||
|
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| ### Quantitative | ||
|
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| --8<-- "study/figures/b-cys/b004-cys147_ca-cys204_ca/pmf-info.md" | ||
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| ## Visualization | ||
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| <div id="b004-view" class="mol-container"></div> | ||
|
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| <script> | ||
| document.addEventListener('DOMContentLoaded', (event) => { | ||
| const viewer = molstar.Viewer.create('b004-view', { | ||
| layoutIsExpanded: false, | ||
| layoutShowControls: false, | ||
| layoutShowRemoteState: false, | ||
| layoutShowSequence: true, | ||
| layoutShowLog: false, | ||
| layoutShowLeftPanel: false, | ||
| viewportShowExpand: true, | ||
| viewportShowSelectionMode: true, | ||
| viewportShowAnimation: false, | ||
| pdbProvider: 'rcsb', | ||
| }).then(viewer => { | ||
| // viewer.loadStructureFromUrl("/analysis/005-rogfp-glh-md/data/traj/frame_106403.pdb", "pdb"); | ||
| viewer.loadSnapshotFromUrl("/misc/002-molstar-states/f001.molj", "molj"); | ||
| }); | ||
| }); | ||
| </script> |
44 changes: 2 additions & 42 deletions
44
study/figures/shared-figures/002-md-sims-manuscript/index.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,45 +1,5 @@ | ||
| # B004: Cys147 CA - Cys204 CA | ||
|
|
||
| ## Probability density function | ||
|
|
||
| <figure markdown> | ||
| {width=600} | ||
| </figure> | ||
|
|
||
| ### Quantitative | ||
|
|
||
| --8<-- "study/figures/b-cys/b004-cys147_ca-cys204_ca/pdf-info.md" | ||
|
|
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| ## Potential of mean force | ||
| # Fig002 | ||
|
|
||
| <figure markdown> | ||
| {width=600} | ||
| {width=600} | ||
| </figure> | ||
|
|
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| ### Quantitative | ||
|
|
||
| --8<-- "study/figures/b-cys/b004-cys147_ca-cys204_ca/pmf-info.md" | ||
|
|
||
| ## Visualization | ||
|
|
||
| <div id="b004-view" class="mol-container"></div> | ||
|
|
||
| <script> | ||
| document.addEventListener('DOMContentLoaded', (event) => { | ||
| const viewer = molstar.Viewer.create('b004-view', { | ||
| layoutIsExpanded: false, | ||
| layoutShowControls: false, | ||
| layoutShowRemoteState: false, | ||
| layoutShowSequence: true, | ||
| layoutShowLog: false, | ||
| layoutShowLeftPanel: false, | ||
| viewportShowExpand: true, | ||
| viewportShowSelectionMode: true, | ||
| viewportShowAnimation: false, | ||
| pdbProvider: 'rcsb', | ||
| }).then(viewer => { | ||
| // viewer.loadStructureFromUrl("/analysis/005-rogfp-glh-md/data/traj/frame_106403.pdb", "pdb"); | ||
| viewer.loadSnapshotFromUrl("/misc/002-molstar-states/f001.molj", "molj"); | ||
| }); | ||
| }); | ||
| </script> |