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Merge pull request #2210 from obophenotype/2209_relabel_fat-cell
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Fixes #2209 relabel fat cell
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@aleixpuigb
aleixpuigb authored Nov 2, 2023
2 parents 6fa4973 + 173aaf9 commit 0d04299
Showing 1 changed file with 24 additions and 24 deletions.
48 changes: 24 additions & 24 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4731,15 +4731,15 @@ EquivalentClasses(obo:CL_0000135 ObjectIntersectionOf(obo:CL_0000499 ObjectSomeV
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000135 obo:CL_0000499)
SubClassOf(obo:CL_0000135 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000057))

# Class: obo:CL_0000136 (fat cell)
# Class: obo:CL_0000136 (adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D017667") obo:IAO_0000115 obo:CL_0000136 "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000136 "BTO:0000443")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000136 "CALOHA:TS-0012")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000136 "FMA:63880")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000136 "adipocyte")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000136 "adipose cell")
AnnotationAssertion(rdfs:label obo:CL_0000136 "fat cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000136 "fat cell")
AnnotationAssertion(rdfs:label obo:CL_0000136 "adipocyte")
SubClassOf(obo:CL_0000136 obo:CL_0000325)
SubClassOf(obo:CL_0000136 obo:CL_0002320)
SubClassOf(obo:CL_0000136 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134))
Expand Down Expand Up @@ -7165,26 +7165,26 @@ SubClassOf(obo:CL_0000446 obo:CL_0002260)
AnnotationAssertion(rdfs:label obo:CL_0000447 "carbohydrate secreting cell")
SubClassOf(obo:CL_0000447 obo:CL_0000151)

# Class: obo:CL_0000448 (white fat cell)
# Class: obo:CL_0000448 (white adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D052438") obo:IAO_0000115 obo:CL_0000448 "Fat cells with light coloration and few mitochondria. They contain a scant ring of cytoplasm surrounding a single large lipid droplet or vacuole.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D052438") obo:IAO_0000115 obo:CL_0000448 "An adipocyte with light coloration and few mitochondria. It contains a scant ring of cytoplasm surrounding a single large lipid droplet or vacuole.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000448 "CALOHA:TS-1119")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000448 "FMA:83434")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000448 "white adipose cell")
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000448 "white adipocyte")
AnnotationAssertion(rdfs:label obo:CL_0000448 "white fat cell")
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000448 "white fat cell")
AnnotationAssertion(rdfs:label obo:CL_0000448 "white adipocyte")
SubClassOf(obo:CL_0000448 obo:CL_0000136)
SubClassOf(obo:CL_0000448 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001347))
SubClassOf(obo:CL_0000448 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002334))

# Class: obo:CL_0000449 (brown fat cell)
# Class: obo:CL_0000449 (brown adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D002001") obo:IAO_0000115 obo:CL_0000449 "A cell from the thermogenic form of adipose tissue found in many species, particularly in newborns and hibernating mammals, but also in lesser amounts in adults of other mammals including humans. Brown fat is capable of rapid liberation of energy and seems to be important in the maintenance of body temperature immediately after birth and upon waking from hibernation.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000449 "CALOHA:TS-0099")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000449 "FMA:83435")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000449 "brown adipocyte")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000449 "brown adipose cell")
AnnotationAssertion(rdfs:label obo:CL_0000449 "brown fat cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000449 "brown fat cell")
AnnotationAssertion(rdfs:label obo:CL_0000449 "brown adipocyte")
SubClassOf(obo:CL_0000449 obo:CL_0000136)
SubClassOf(obo:CL_0000449 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001348))
SubClassOf(obo:CL_0000449 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002335))
Expand Down Expand Up @@ -13262,7 +13262,7 @@ EquivalentClasses(obo:CL_0001069 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeV

# Class: obo:CL_0001070 (beige adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl:hasDbXref "GOC:ymb") Annotation(oboInOwl:hasDbXref "PMID:22796012") Annotation(oboInOwl:hasDbXref "PMID:25851693") obo:IAO_0000115 obo:CL_0001070 "A fat cell that is beige in color, thermogenic, and which differentiates in white fat tissue from a Myf5-negative progenitor.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl:hasDbXref "GOC:ymb") Annotation(oboInOwl:hasDbXref "PMID:22796012") Annotation(oboInOwl:hasDbXref "PMID:25851693") obo:IAO_0000115 obo:CL_0001070 "An adipocyte that is beige in color, thermogenic, and which differentiates in white fat tissue from a Myf5-negative progenitor.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0001070 "MESH:D000069797")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001070 "beige brown adipocyte")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001070 "beige fat cell")
Expand Down Expand Up @@ -17126,12 +17126,12 @@ AnnotationAssertion(rdfs:label obo:CL_0002332 "ciliated cell of the bronchus")
EquivalentClasses(obo:CL_0002332 ObjectIntersectionOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185)))
SubClassOf(obo:CL_0002332 obo:CL_0002145)

# Class: obo:CL_0002333 (neural crest derived fat cell)
# Class: obo:CL_0002333 (neural crest derived adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:17507398") obo:IAO_0000115 obo:CL_0002333 "A fat cell derived from a neural crest cell.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:17507398") obo:IAO_0000115 obo:CL_0002333 "An adipocyte derived from a neural crest cell.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002333 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002333 "2010-09-20T02:25:25Z")
AnnotationAssertion(rdfs:label obo:CL_0002333 "neural crest derived fat cell")
AnnotationAssertion(rdfs:label obo:CL_0002333 "neural crest derived adipocyte")
EquivalentClasses(obo:CL_0002333 ObjectIntersectionOf(obo:CL_0000136 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)))
SubClassOf(obo:CL_0002333 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000005))

Expand Down Expand Up @@ -18979,13 +18979,13 @@ AnnotationAssertion(rdfs:label obo:CL_0002520 "nephrocyte")
SubClassOf(obo:CL_0002520 obo:CL_0002522)
SubClassOf(obo:CL_0002520 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_50557))

# Class: obo:CL_0002521 (subcutaneous fat cell)
# Class: obo:CL_0002521 (subcutaneous adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002521 "A fat cell that is part of subcutaneous adipose tissue.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002521 "An adipocyte that is part of subcutaneous adipose tissue.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002521 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002521 "2011-02-21T02:51:22Z")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002521 "subcutaneous adipocyte")
AnnotationAssertion(rdfs:label obo:CL_0002521 "subcutaneous fat cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002521 "subcutaneous fat cell")
AnnotationAssertion(rdfs:label obo:CL_0002521 "subcutaneous adipocyte")
EquivalentClasses(obo:CL_0002521 ObjectIntersectionOf(obo:CL_0000136 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002190)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002521 obo:CL_0000136)

Expand Down Expand Up @@ -19848,7 +19848,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002614 obo:CL_0000117

# Class: obo:CL_0002615 (adipocyte of omentum tissue)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002615 "A fat cell that is part of omentum tissue.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002615 "An adipocyte that is part of omentum tissue.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002615 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002615 "2011-03-14T10:17:00Z")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002615 "omental adipocyte")
Expand All @@ -19859,7 +19859,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002615 obo:CL_0000136

# Class: obo:CL_0002616 (perirenal adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002616 "A fat cell of perirenal fat tissue.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002616 "An adipocyte of perirenal fat tissue.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002616 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002616 "2011-03-14T10:17:05Z")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002616 "perirenal adipocyte cell")
Expand All @@ -19870,7 +19870,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002616 obo:CL_0000136

# Class: obo:CL_0002617 (adipocyte of breast)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002617 "A fat cell that is part of the breast.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002617 "An adipocyte that is part of the breast.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002617 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002617 "2011-03-14T10:17:07Z")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002617 "CALOHA:TS-2377")
Expand Down Expand Up @@ -25111,7 +25111,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000308 obo:CL_0000135

# Class: obo:CL_1000309 (epicardial adipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000309 "A fat cell that is part of the epicardial fat.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000309 "An adipocyte that is part of the epicardial fat.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000309 "FMA:261293")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261293") oboInOwl:hasExactSynonym obo:CL_1000309 "adipocyte of epicardial fat")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261293") oboInOwl:hasExactSynonym obo:CL_1000309 "epicardial fat cell")
Expand All @@ -25121,7 +25121,7 @@ SubClassOf(obo:CL_1000309 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000234

# Class: obo:CL_1000310 (adipocyte of epicardial fat of right ventricle)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000310 "A fat cell that is part of the epicardial fat of right ventricle.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000310 "An adipocyte that is part of the epicardial fat of right ventricle.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000310 "FMA:261297")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261297") oboInOwl:hasExactSynonym obo:CL_1000310 "epicardial adipocyte of right ventricle")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261297") oboInOwl:hasExactSynonym obo:CL_1000310 "epicardial fat cell of right ventricle")
Expand All @@ -25132,7 +25132,7 @@ SubClassOf(obo:CL_1000310 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000208

# Class: obo:CL_1000311 (adipocyte of epicardial fat of left ventricle)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000311 "A fat cell that is part of the epicardial fat of left ventricle.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000311 "An adipocyte that is part of the epicardial fat of left ventricle.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000311 "FMA:261300")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261300") oboInOwl:hasExactSynonym obo:CL_1000311 "epicardial adipocyte of left ventricle")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261300") oboInOwl:hasExactSynonym obo:CL_1000311 "epicardial fat cell of left ventricle")
Expand Down

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